View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-16 (Length: 334)
Name: NF3288-Insertion-16
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-16 |
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| [»] chr1 (5 HSPs) |
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| [»] scaffold0432 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 9828563 - 9828889
Alignment:
| Q |
7 |
aattttgtgcttctttttcctctgaattttggaatatatcttacttaagttaatggcctcgtcagatgcatcactcgaatcagaatccttgctatgatct |
106 |
Q |
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| T |
9828563 |
aattttgtgcttctttttcctctgaattttggaatatatcttacttaagttaatgccctcgtcagatgcatcactcgaatcagaatccttgctatgatct |
9828662 |
T |
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| Q |
107 |
tgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagatacatcaaaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9828663 |
tgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagatacatcaaaat |
9828762 |
T |
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| Q |
207 |
catcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcatcatttgttggaatactttgctgatagttga |
306 |
Q |
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| T |
9828763 |
catcaacaataaaacctttcgagtttccttcctcactttg-tgataagtcctctattgattcagcatcatcatttgttggaatactttgctgatagttga |
9828861 |
T |
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| Q |
307 |
ccttatcatcatgacttttggttacaca |
334 |
Q |
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| T |
9828862 |
ccttatcatcatgacttttggttacaca |
9828889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 80 - 334
Target Start/End: Original strand, 9755161 - 9755414
Alignment:
| Q |
80 |
ctcgaatcagaatccttgctatgatcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagagg |
179 |
Q |
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| T |
9755161 |
ctcgaatcagaatccttgctatgatcatttatatcttgcgagtcattcaaatcagagtccacatcaccattacgtcctccatcttgtgacttgctagagg |
9755260 |
T |
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| Q |
180 |
tgacttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcatcat |
279 |
Q |
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| T |
9755261 |
tgacttcacaaccagataaatcaaaatcatcaacaataaaacctttcaagtttccttcctcactttg-tgataagtcctctattgattcagcatcatcat |
9755359 |
T |
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| Q |
280 |
ttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacaca |
334 |
Q |
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| T |
9755360 |
ttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacaca |
9755414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 7 - 334
Target Start/End: Original strand, 9803718 - 9804062
Alignment:
| Q |
7 |
aattttgtgcttctttttcctctgaattttggaatatatcttacttaagttaatggcctcgtcagatgcatcactcgaatcagaatccttgctat---ga |
103 |
Q |
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| T |
9803718 |
aattttgtgcttctttttcctcagaatttccgagaatatcttgccaaagttcatgtcctcatcatatacattgcacgaatcagaatctttgctattatga |
9803817 |
T |
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| Q |
104 |
tcttgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctccatcttgtgacttgctagaggtgacttcacaactagatacatcaa |
203 |
Q |
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| ||||||||| || ||||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||| ||||||||||||||||| |
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| T |
9803818 |
tattgtaaatcatgcgagttattcaaatcagagtctacatcaccattacatcctccatcttgggacatgctagaggtgacttgacaactagatacatcaa |
9803917 |
T |
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| Q |
204 |
aatcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgat---------------tcagcatcatcatttgttggaa |
288 |
Q |
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| T |
9803918 |
aatcatcgacgataaaatctataaagtttccttcttcgctttg-tgataagtcctctattgatccataatcattatcatgagcctcttcatttgttggaa |
9804016 |
T |
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| Q |
289 |
tactttgctgatagttgaccttatcatcatgacttttggttacaca |
334 |
Q |
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| T |
9804017 |
tactttgctgatagttgaccttatcaccatgaattttgcttacaca |
9804062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 9708599 - 9708640
Alignment:
| Q |
271 |
catcatcatttgttggaatactttgctgatagttgaccttat |
312 |
Q |
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| T |
9708599 |
catcatcattttttggaatactctgctgatacttgaccttat |
9708640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 9755892 - 9755952
Alignment:
| Q |
183 |
cttcacaactagatacatcaaaatcatcaacaataaaacctttcgagtttctttcctcact |
243 |
Q |
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|||||||| |||| ||||||||||||||||||||||| | ||| ||||| ||||||||| |
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| T |
9755892 |
cttcacaatcagatgcatcaaaatcatcaacaataaaatcattcatgtttccttcctcact |
9755952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 7049 - 7319
Alignment:
| Q |
7 |
aattttgtgcttctttttcctctgaattttggaatatatcttacttaagttaatggcctcgtcagatgcatcactcgaatcagaatccttgctatgatct |
106 |
Q |
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||||||||||||| |||||||||||||||| || || |||||| ||||||||| |||| |||||| ||| ||||| ||||||||||| ||||||| |
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| T |
7049 |
aattttgtgcttccttttcctctgaattttagataatttcttaccaaagttaatgtcctcatcagatacattgtgcgaattagaatccttgccatgatct |
7148 |
T |
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| Q |
107 |
tgtaaatcttgtaagttattcaaatcagagtcgacatcaccattatgtcctc--catcttgtgacttgctagaggtgacttcacaactagatacatcaaa |
204 |
Q |
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| T |
7149 |
tgtaaatcatgcgagtcatttaaatcagagtccacatcaccgttacgtcctctccttcttgtgacttgctagaggcgacttcacagctagatatatcaaa |
7248 |
T |
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| Q |
205 |
atcatcaacaataaaacctttcgagtttctttcctcactttgttgataagtcctctattgattcagcatcat |
276 |
Q |
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| T |
7249 |
atcatcaacaataaaacctttcaagtttccttcttcactttg-tgataagtcctctattgatccagcatcat |
7319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 7334 - 7368
Alignment:
| Q |
276 |
tcatttgttggaatactttgctgatagttgacctt |
310 |
Q |
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| T |
7334 |
tcatttgttggaatactttgatgatagttgacctt |
7368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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