View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288-Insertion-17 (Length: 284)

Name: NF3288-Insertion-17
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288-Insertion-17
NF3288-Insertion-17
[»] chr3 (8 HSPs)
chr3 (150-284)||(52087576-52087712)
chr3 (8-101)||(52088138-52088231)
chr3 (155-221)||(11511300-11511366)
chr3 (155-221)||(55122135-55122201)
chr3 (157-221)||(41755056-41755120)
chr3 (164-218)||(11510222-11510276)
chr3 (155-200)||(50122383-50122428)
chr3 (155-215)||(55121581-55121641)
[»] chr7 (6 HSPs)
chr7 (155-221)||(46088963-46089029)
chr7 (159-221)||(46089676-46089738)
chr7 (164-221)||(46741412-46741469)
chr7 (164-221)||(4997335-4997393)
chr7 (155-221)||(47405451-47405517)
chr7 (164-221)||(31873857-31873914)
[»] scaffold0153 (1 HSPs)
scaffold0153 (155-221)||(17390-17456)
[»] chr6 (3 HSPs)
chr6 (153-221)||(19757887-19757956)
chr6 (161-200)||(5723058-5723097)
chr6 (164-200)||(25987139-25987175)
[»] chr5 (1 HSPs)
chr5 (155-221)||(9070420-9070486)
[»] chr1 (3 HSPs)
chr1 (155-221)||(21263349-21263415)
chr1 (157-221)||(10974750-10974814)
chr1 (155-211)||(32160722-32160778)
[»] chr2 (5 HSPs)
chr2 (164-221)||(33667747-33667804)
chr2 (164-221)||(33667877-33667934)
chr2 (157-265)||(16118977-16119088)
chr2 (155-200)||(16119119-16119164)
chr2 (164-200)||(16340580-16340616)
[»] chr8 (1 HSPs)
chr8 (157-221)||(3642524-3642589)
[»] chr4 (1 HSPs)
chr4 (164-221)||(40900250-40900307)


Alignment Details
Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 150 - 284
Target Start/End: Complemental strand, 52087712 - 52087576
Alignment:
Q  150 gtgttcttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacgtatgtttttcagcctatcaaatg 247  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||| ||||||||||||||||||||||     
T  52087712 gtgttcttcggcacttaactgcagccggttcattacttcggtagttaactgtcgagggggtattttcgtcttttacatatgtttttcagcctatcaaata 52087613  T
Q  248 cgtcaacattaattttcttgcaccttttctagtcata 284  Q
     |||||| |||||||||||||||||||||||||||||    
T  52087612 tgtcaacgttaattttcttgcaccttttctagtcata 52087576  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 52088231 - 52088138
Alignment:
Q  8 gtaatgacgtgtcaacgagaggtgaagtttgttgaattgttatgcttgctaacgtctgagatttagtcactaaagtactaaagcaatctttgca 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  52088231 gtaatgatgtgtcaacgagaggtgaagtttgttgaattgttatgcttgctaacgtctgagatttagtcactaaagcactaaagcaatctttgca 52088138  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 11511300 - 11511366
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||| ||| | || |||||||||||    
T  11511300 cttcggtagttaactgcagccggttcattatttcggtagttaactgtcgaggaggcattttcgtctt 11511366  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 55122135 - 55122201
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||| ||||||||||| ||||||||||||||| ||| |||| |||||||||||    
T  55122135 cttcgggagttaactgcaaccggttcattatttcggtagttaactgtcgagggggcattttcgtctt 55122201  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 41755056 - 41755120
Alignment:
Q  157 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| |||| |||||||||||||||| ||| ||||||||||| ||| |||  |||||||||||    
T  41755056 tcggcagttaattgcagccggttcattatttcagtagttaactgtcgaggggacattttcgtctt 41755120  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 11510276 - 11510222
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgt 218  Q
    ||||||||||| ||||||||| ||||||||||||| | ||| ||| |||||||||    
T  11510276 ttaactgcagctggttcattatttcggtagttaaccgtcgaggggatattttcgt 11510222  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 50122428 - 50122383
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactg 200  Q
    |||||||| ||||||||||||||||| | | |||||||||||||||    
T  50122428 cttcggcagttaactgcagccggttcttaatttcggtagttaactg 50122383  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 215
Target Start/End: Complemental strand, 55121641 - 55121581
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtatttt 215  Q
    |||||| | ||||| ||| ||||||||||| ||||||||||||||| ||| |||| |||||    
T  55121641 cttcggtagttaaccgcaaccggttcattatttcggtagttaactgccgagggggcatttt 55121581  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 46089029 - 46088963
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||||||| |||| ||||| |||||    
T  46089029 cttcgggagttaactgcagccggttcattatttcggtagttaactggcgagggggcatttttgtctt 46088963  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Original strand, 46089676 - 46089738
Alignment:
Q  159 ggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||| |||||||||||||||||| || || |||||||||||| ||| |||| |||||||||||    
T  46089676 ggcagttaactgcagccggttcactattttggtagttaactgccgagggggcattttcgtctt 46089738  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 46741412 - 46741469
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||  |||||||||||    
T  46741412 ttaactgcagccgattcattatttcggtagttaattgtcgaagggacattttcgtctt 46741469  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 4997393 - 4997335
Alignment:
Q  164 ttaactgcagccggtt-cattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    ||||||| |||||||| ||  ||||||||||||||||| || |||||||||||||||||    
T  4997393 ttaactgtagccggtttcaaaacttcggtagttaactgccgtaggggtattttcgtctt 4997335  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 47405451 - 47405517
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||||||||||| ||| ||| ||||||||||| ||| |||  |||||||||||    
T  47405451 cttcggtagttaactgcagccggttctttatttcagtagttaactgccgaggggacattttcgtctt 47405517  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 31873857 - 31873914
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||||||||||||||   || |||||||||||||| || || ||||||||||||||    
T  31873857 ttaactgcagccggttccaaacatcggtagttaactgccgtagaggtattttcgtctt 31873914  T

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Target: scaffold0153 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 17390 - 17456
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||||||||||||||| ||||||||||||||| ||| |||  |||||||||||    
T  17390 cttcggtagttaactgcagccggttcattatttcggtagttaactgccgaggggtcattttcgtctt 17456  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 221
Target Start/End: Original strand, 19757887 - 19757956
Alignment:
Q  153 ttcttcggcaattaactgcagccggttcatt-acttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||||||| ||||||||||||||||| || |||||||||||||||||  | ||| |||||||||||||    
T  19757887 ttcttcggcagttaactgcagccggttctttaacttcggtagttaactgctgcaggagtattttcgtctt 19757956  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 5723097 - 5723058
Alignment:
Q  161 caattaactgcagccggttcattacttcggtagttaactg 200  Q
    |||||||||||||||||||||||| |||| ||||||||||    
T  5723097 caattaactgcagccggttcattatttcgatagttaactg 5723058  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 25987175 - 25987139
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactg 200  Q
    |||||||||||| |||||||| |||||||||||||||    
T  25987175 ttaactgcagccagttcattatttcggtagttaactg 25987139  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Original strand, 9070420 - 9070486
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| | ||||||||||| ||||| ||||||||||||||||||| || |||  ||||||||||||    
T  9070420 cttcggaagttaactgcagctggttccttacttcggtagttaactgccgcaggaatattttcgtctt 9070486  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 21263415 - 21263349
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| |||||||||||| ||||||   ||||||||||||||||| || |||||||||||| ||||    
T  21263415 cttcgggaattaactgcagtcggttccaaacttcggtagttaactgccgcaggggtattttcatctt 21263349  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 10974750 - 10974814
Alignment:
Q  157 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| ||||||||| ||||||| ||||||| ||||||||||| || || || |||||||||||    
T  10974750 tcggcagttaactgcaaccggttccttacttcagtagttaactgtcgcagaggcattttcgtctt 10974814  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 211
Target Start/End: Complemental strand, 32160778 - 32160722
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggta 211  Q
    |||||| | |||||||||||||||||   ||||||||||||||||| || |||||||    
T  32160778 cttcggaagttaactgcagccggttccaaacttcggtagttaactgccgcaggggta 32160722  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 33667804 - 33667747
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||  |||||| ||||    
T  33667804 ttaactgcagccggttcattatttcggtagttaactgccgaggggagattttcatctt 33667747  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 33667877 - 33667934
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    ||||||||||||||||||||| |||||||||||||||  || | || |||||||||||    
T  33667877 ttaactgcagccggttcattatttcggtagttaactgctgaggaggcattttcgtctt 33667934  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 265
Target Start/End: Complemental strand, 16119088 - 16118977
Alignment:
Q  157 tcggcaattaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtc--ttacgtatgtttttcag-cctatcaaatgcgtcaa 253  Q
    |||||| |||||||||| |||||  ||||||||||||||||| |  | ||||| |||||||||  |||| | |||||||||| ||||||| ||| |||||    
T  16119088 tcggcagttaactgcagtcggtttcttacttcggtagttaaccgttgcaggggcattttcgtcatttacatgtgtttttcagccctatcatatgtgtcaa 16118989  T
Q  254 cattaattttct 265  Q
    ||  ||||||||    
T  16118988 cagcaattttct 16118977  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 16119119 - 16119164
Alignment:
Q  155 cttcggcaattaactgcagccggttcattacttcggtagttaactg 200  Q
    |||| ||| ||||||||||||||||| ||||||||||||| |||||    
T  16119119 cttcagcagttaactgcagccggttctttacttcggtagtaaactg 16119164  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 16340580 - 16340616
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactg 200  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  16340580 ttaactgcaaccggttccttacttcggtagttaactg 16340616  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 3642524 - 3642589
Alignment:
Q  157 tcggcaattaactgcagccggttcatta-cttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    |||||| ||||||||| ||||||| ||| ||||| |||||||||| || | |||||||||||||||    
T  3642524 tcggcagttaactgcaaccggttctttaacttcgatagttaactgccgcatgggtattttcgtctt 3642589  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 40900307 - 40900250
Alignment:
Q  164 ttaactgcagccggttcattacttcggtagttaactggcgaaggggtattttcgtctt 221  Q
    ||||||| |||||||| |||| |||| |||||||||| ||| |||| |||||||||||    
T  40900307 ttaactgtagccggtttattatttcgatagttaactgccgatggggcattttcgtctt 40900250  T

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