View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3288-Insertion-18 (Length: 275)
Name: NF3288-Insertion-18
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-18 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 35891830 - 35891565
Alignment:
| Q |
8 |
caaatttagtatataca-atttccaccatgtttgtccttatcatgattttactagaaactgttgaacaagtggccaagccactcaaacatttaaagnnnn |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35891830 |
caaatttagtatatacatatttccaccatgtttgtccttatcatgattttactagaaactgttgaacaagtggccaagccactcaaacattaaaagaaaa |
35891731 |
T |
|
| Q |
107 |
nnntggttatataannnnnnnnnaagtagtctatgctaaaaattaatcnnnnnnnaatgaataagtagggtgttcgcaattcaaacctcaacccctaatg |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||| ||||||| | || |
|
|
| T |
35891730 |
aaatggttatata--tatttttttagtagtctatgctaaaaattaatctttttttaataaataagtagggtgtttgcaattcaaacttcaaccctcactg |
35891633 |
T |
|
| Q |
207 |
ttatacttatatcatgttgannnnnnnnnctacatatattcccttcatgcaaggttgtcttattttgga |
275 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35891632 |
ttatacttatatcatgttga-ttttttttctacatatattcccttcatgcaaggttgtcttattttgga |
35891565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University