View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-2 (Length: 1002)
Name: NF3288-Insertion-2
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 635; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 227 - 966
Target Start/End: Original strand, 40614659 - 40615406
Alignment:
| Q |
227 |
tgataagcagcaaagcaatagcatccatcctctccaagaaagcacgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
326 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40614659 |
tgataagcagcaaagcaatagcatccatcgtctccaagaaagctcgcttggctttgggtctcggcgccgctgcaactactgtgtactcctctgtccttgt |
40614758 |
T |
|
| Q |
327 |
cgaccaattccacgacactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtcc-------- |
418 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40614759 |
cgaccaattccacggcactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtccgcgctcgt |
40614858 |
T |
|
| Q |
419 |
--tcacactctctcagccatcttcgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctacta |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40614859 |
actcacactctctcagccatcttcgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgatgttcaatgtcttcctacta |
40614958 |
T |
|
| Q |
517 |
ttgttcagaatcttggtcttgattcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctagtccgttga |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40614959 |
ttgttcagaatcttggtcttgattcttgaatatgataagattcttcattctattgctaatgaggttctcga-tccgttgttgctaaatctagtccgttga |
40615057 |
T |
|
| Q |
617 |
tgctttttataagtcattcttggtattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattac |
716 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40615058 |
tgctttttataagtcattcttggtattctgatcgagttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattac |
40615157 |
T |
|
| Q |
717 |
tcgtttctcttgtactgacaaccctaggtaaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgat |
816 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40615158 |
tcgtttctcttgtactgacaaccctagataaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgat |
40615257 |
T |
|
| Q |
817 |
gttgctctacatttcagagactgaattgtttgggtatttatttattttacggatccatctga-tttagggtttcaactttagggaccgatctgaaagtgc |
915 |
Q |
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| T |
40615258 |
gttgctctacatttcagagactgaattgtttgggtatttatttattttacggatccatctgattttagggtttcaactttagggaccaatctgaaagtgc |
40615357 |
T |
|
| Q |
916 |
taactaaagatacattaatttgaactaaaattacccgcaa-ttatcatatca |
966 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||||||||||| |
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|
| T |
40615358 |
taactaaagata---acatttgaactaaaattacccgcaatttatcatatca |
40615406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 3e-97
Query Start/End: Original strand, 319 - 726
Target Start/End: Original strand, 40610817 - 40611227
Alignment:
| Q |
319 |
gtccttgtcgaccaattccacgacactcttccagaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtcc |
418 |
Q |
| |
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||||| ||||||| |||||||| ||||||||| ||| || || |||||| ||||||| |||||||||||||||||||||||||||||| || ||| |
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| T |
40610817 |
gtcctcgtcgaccgattccacggcactcttcccagatccgtcggcaaaggaattcatttcaagatcccatgggttcaaaagccctacatcttcgacctcc |
40610916 |
T |
|
| Q |
419 |
----------tcacactctctcagccatcttcgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtct |
508 |
Q |
| |
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||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||| |||| |
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| T |
40610917 |
gccctcgtactcacaggctctcagccatctccgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgaggttcaacgtct |
40611016 |
T |
|
| Q |
509 |
tcctactattgttcagaatcttggtcttgattcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctag |
608 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| || ||||||||| ||| |||||||||||||||||||||||| ||||||||||||| || |
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| T |
40611017 |
tcctactattgttcagaatcttggtcttga-------atatgacaagattcttaattttattgctaatgaggttctcgaatctattgttgctaaatcgag |
40611109 |
T |
|
| Q |
609 |
tccgttgatgctttttataagtcattcttggtattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggtt |
708 |
Q |
| |
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|| || |||||||||| |||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||| |||||||||||||||||||| || |
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| T |
40611110 |
tcttttaatgctttttagaagtcattcttggttttctgaacgtgttaaggatgcttttgttggacgtgctaaggatttaaatattcttattgacgagatt |
40611209 |
T |
|
| Q |
709 |
gacattactcgtttctct |
726 |
Q |
| |
|
|| ||||||| ||||||| |
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| T |
40611210 |
gatattactcatttctct |
40611227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 40614442 - 40614583
Alignment:
| Q |
8 |
gagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacacccttttggccacatttannnnnnnctcaactctataatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
40614442 |
gagggtaatttcttgttttagtagcaggttttataattttcctcttctacaagg--cacacccttttggccacatttatttttttctcaactctataatt |
40614539 |
T |
|
| Q |
108 |
ttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
151 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40614540 |
ttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
40614583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 40610482 - 40610622
Alignment:
| Q |
8 |
gagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacacccttttggccacatttannnnnnnctcaactctataatt |
107 |
Q |
| |
|
||||||||||| || ||||||| ||||||| ||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||| ||||| |
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| T |
40610482 |
gagggtaattt-ttattttagtggcaggttgtataattttccccttctacaaggcacac--ccttttggccacgtttatttttttctcaactctctaatt |
40610578 |
T |
|
| Q |
108 |
ttccccttcgacaagtcacaggtgtttcgccacatttatttatt |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||| |
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|
| T |
40610579 |
ttccccttcgacaagtcacatgtgtttcgcgacatttatttatt |
40610622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 759 - 860
Target Start/End: Original strand, 40612811 - 40612914
Alignment:
| Q |
759 |
tctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatgttgctc--tacatttcagagactgaattgtttgggtattta |
856 |
Q |
| |
|
||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
40612811 |
tctattttataaaaatcattttttgaaatatattgataatctatatgactaacttgatgttgctctatacatttcagagactgaattgggtgggtattta |
40612910 |
T |
|
| Q |
857 |
ttta |
860 |
Q |
| |
|
|||| |
|
|
| T |
40612911 |
ttta |
40612914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 40610698 - 40610743
Alignment:
| Q |
230 |
taagcagcaaagcaatagcatccatcctctccaagaaagcacgctt |
275 |
Q |
| |
|
|||||||| |||||| |||||||| ||||| ||||||||||||||| |
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|
| T |
40610698 |
taagcagccaagcaaaagcatccaacctcttcaagaaagcacgctt |
40610743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 352 - 538
Target Start/End: Complemental strand, 1385228 - 1385032
Alignment:
| Q |
352 |
gaatctgttggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatcttggatgtcc----------tcacactctctcagccatcttcg |
441 |
Q |
| |
|
||||| || |||||||||||||||||||| |||||||||||||||||||| ||| |||| ||| ||| |||||| ||||| |||||| || |
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| T |
1385228 |
gaatcagtcggtgaaggaactcatttcctcatcccatgggttcaaaagccttacgtcttcgatatccgcactcgacctcacacattctcatccatctccg |
1385129 |
T |
|
| Q |
442 |
ctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
538 |
Q |
| |
|
|||| | |||| | | ||||||||||||||| |||||| |||||||||| ||| || || ||||||||||||||||||||||||| |||||||| |
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| T |
1385128 |
gtaccaaagatcttcagatggtgaatctcactcttcgtgttctctctcgtcctgatactgaacgtcttcctactattgttcagaatctcggtcttga |
1385032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 461 - 538
Target Start/End: Original strand, 231737 - 231814
Alignment:
| Q |
461 |
ggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
538 |
Q |
| |
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||||||| | ||||| |||||| |||||||||| ||| |||||||||||||||||||||||| |||| |||||||||| |
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| T |
231737 |
ggtgaattttactcttcgtgttctctctcgtcctgatactcaatgtcttcctactattgttcggaattttggtcttga |
231814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 18133264 - 18133313
Alignment:
| Q |
361 |
ggtgaaggaactcatttcctgatcccatgggttcaaaagccctacatctt |
410 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||| |||||||| |
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|
| T |
18133264 |
ggtgaaggaacccatttcctcatcccatgggttcaaaagccttacatctt |
18133313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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