View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288-Insertion-20 (Length: 288)

Name: NF3288-Insertion-20
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288-Insertion-20
NF3288-Insertion-20
[»] chr2 (1 HSPs)
chr2 (8-288)||(10385598-10385877)


Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 10385877 - 10385598
Alignment:
Q  8 ttacttacccctatttttggatgacatattatggtgattcattgtagtaaacgcgtttatgaaatgtgacactggaactaacatgctggcaatatatctg 107  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10385877 ttacttacccctgtttttggatgacatattatggtgattcattgtagtaaatgcgttgatgaaatgtgacactggaactaacatgctggcaatatatctg 10385778  T
Q  108 atcttatgcccagaagggatatgcaaggaaaaagatgaggttgctgctttacaatcaaaggaagcactattgttcttaatctagctactgagagctatgc 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10385777 atcttatgcccagaagggata-gcaaggaaaaagatgaggttgctgctttacaatcaaaggaagcactattgttcttaatctagttactgagagctatgc 10385679  T
Q  208 aaagcttattcattggttaaaagtatatgatagtgcacattacagttgcatgtctttgtcatctgttttctgagatgaaca 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10385678 aaagcttattcattggttaaaagtatatgatagtgcacattacagttgcatgtctttgtcatctgttttctgagatgaaca 10385598  T

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