View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3288-Insertion-21 (Length: 226)
Name: NF3288-Insertion-21
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-21 |
 | |
|
| [»] scaffold0702 (2 HSPs) |
| |
|
| [»] scaffold0662 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: scaffold0702 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 5370 - 5153
Alignment:
| Q |
8 |
gacactagaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgtgcccaaaacctgatagaggacaagatcaaactttgagcaaacta |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5370 |
gacacttgaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgtgcccaaaacctgatagaggacaagatcaaactttgagcaaacta |
5271 |
T |
|
| Q |
108 |
ctgaaggagaaaagtaacgtgtttgctactctcgaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
207 |
Q |
| |
|
||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5270 |
ctgaaggag-aaagcaacgtgttggctactctcaaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
5172 |
T |
|
| Q |
208 |
aaatgcttctaaccatata |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5171 |
aaatgcttctaaccatata |
5153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 2056 - 2001
Alignment:
| Q |
8 |
gacactagaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgt |
63 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2056 |
gacacttgaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgt |
2001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0662 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 2726 - 2943
Alignment:
| Q |
8 |
gacactagaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgtgcccaaaacctgatagaggacaagatcaaactttgagcaaacta |
107 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2726 |
gacacttgaggaaagaagagtgaaaa-gattaataagaggaagagggagtcactgtgcccaaaacctgatagaggacaagatcaaactttgagcaaacta |
2824 |
T |
|
| Q |
108 |
ctgaaggagaaaagtaacgtgtttgctactctcgaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
207 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2825 |
ctgaaggagaaaagcaacgtgttggctactctcaaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
2924 |
T |
|
| Q |
208 |
aaatgcttctaaccatata |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2925 |
aaatgcttctaaccatata |
2943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 35172063 - 35171845
Alignment:
| Q |
8 |
gacactagaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgtgcccaaaacctgatagaggacaagatcaaactttgagcaaacta |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| || |
|
|
| T |
35172063 |
gacacttgaggaaagaagagtgaaaaagattaataagaggaagagggagtcactgtgttcaaaatctgatagaggacaagatcaaacttcgagcaaaata |
35171964 |
T |
|
| Q |
108 |
ctgaaggagaaaagtaacgtgtttgctactctcgaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
207 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35171963 |
ctgaaggagaaaagcaacgtgtttgctactctcgaagaaaggagcataaagatcagataaagaagaacatcacaattcacaagcatcaacctcttttgga |
35171864 |
T |
|
| Q |
208 |
aaatgcttctaaccatata |
226 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35171863 |
aaatgcttctaaccatata |
35171845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University