View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-3 (Length: 840)
Name: NF3288-Insertion-3
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 14 - 519
Target Start/End: Original strand, 14202011 - 14202517
Alignment:
| Q |
14 |
agaggacagagacacttacatctgtggctgtgggtgcttgagttcccatagtaacttgagcaagagaattggtatgaaaaataaggctcttcctttgagc |
113 |
Q |
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| T |
14202011 |
agaggacagagacacttacatctgtggctgtgggtgcttgagttcccatagtaacttgagaaagagaattggtatgaaaaataaggctcttcctttgagc |
14202110 |
T |
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| Q |
114 |
tttgtgaaacgcaaaaactgtctctgtttagtgtggaatttggccttgctggtatatcccccctagtctacttatatatagtacttaacaagtcaaatgt |
213 |
Q |
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| T |
14202111 |
tttgtgaaacgcaaaaactgtctctgtttagtgtggaatttggccttgcttgtatatcaccactagtctact--tatatagtacttaacaagtcaaatgt |
14202208 |
T |
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| Q |
214 |
caacgtatttatcattacat--nnnnnnnnnnnnntaggagaactattgaacaatggcagaagacnnnnnnnnaccttaaaaaacttannnnnnnnaaac |
311 |
Q |
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| T |
14202209 |
caacgtatttatcattacatgagagagagagagagtaggagaactattgaacaatggtagaagacttttttttaccttaaaaaactta-ttttgttaaac |
14202307 |
T |
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| Q |
312 |
ataaaaaagaaata-tttaattattagggaaatccattctattacaatttacaataataggaaaattctctttaaaaatataggaaaattctcaaacaac |
410 |
Q |
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| T |
14202308 |
ataaaaaagaaatattttaattattagggaaatccattgtagtagaatttacaataataggaaaattctctttaaaaatataggaaaattctcaaacaac |
14202407 |
T |
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| Q |
411 |
aaataattgggtttgttgagagctaatctagtcaaatacaactaatag--aatccaattttaagatttttaacatcttgaacaaagatttttctagatct |
508 |
Q |
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| T |
14202408 |
acataattgggtttggtgagagctaatctagtcaaatagtagtaatagacaatccaattttaagatttttaacatgttgaac-aagatttttcgagattt |
14202506 |
T |
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| Q |
509 |
agcttaaagtc |
519 |
Q |
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| T |
14202507 |
gacttaaagtc |
14202517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 606 - 770
Target Start/End: Original strand, 14202603 - 14202766
Alignment:
| Q |
606 |
tttcgatgaatcataaacttttttgtgtgaatcgattcataaaagtaccatgaactgctacgtaagtaccaatttgcggtatgtagtatttcaagggaat |
705 |
Q |
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| T |
14202603 |
tttcgatgaatcataaacttttttgtgtgaatcgattcgtaaaagtaccatgaactagtatgtaagtaccaatttgcggtatgtagtatttcaagggaat |
14202702 |
T |
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| Q |
706 |
tatctgactaccttaatagttgttgaggtgttgcttgtctttaaaatgccgaaacaagtctttgg |
770 |
Q |
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| T |
14202703 |
tatctgactaccataatagttgttgaggtgttgcttgtcttt-aaatgccgaaacaagtctttgg |
14202766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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