View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288-Insertion-4 (Length: 741)

Name: NF3288-Insertion-4
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288-Insertion-4
NF3288-Insertion-4
[»] chr3 (43 HSPs)
chr3 (7-672)||(51734532-51735193)
chr3 (522-591)||(10453758-10453827)
chr3 (523-591)||(15820660-15820730)
chr3 (522-591)||(2800016-2800085)
chr3 (521-591)||(10450703-10450775)
chr3 (522-591)||(10450479-10450550)
chr3 (523-587)||(10453944-10454008)
chr3 (522-591)||(22666373-22666442)
chr3 (523-591)||(24453758-24453827)
chr3 (523-591)||(48837063-48837132)
chr3 (523-591)||(5321591-5321659)
chr3 (522-591)||(53966211-53966282)
chr3 (523-591)||(11244596-11244666)
chr3 (522-591)||(9180347-9180417)
chr3 (541-591)||(54369038-54369088)
chr3 (531-591)||(9178895-9178956)
chr3 (524-591)||(9179114-9179182)
chr3 (522-591)||(48511465-48511536)
chr3 (544-591)||(48511694-48511741)
chr3 (541-591)||(27219328-27219378)
chr3 (541-591)||(41380723-41380773)
chr3 (541-591)||(43101426-43101476)
chr3 (541-591)||(44573325-44573375)
chr3 (541-591)||(47833717-47833767)
chr3 (523-591)||(10856681-10856750)
chr3 (544-591)||(42190531-42190578)
chr3 (541-591)||(3985772-3985822)
chr3 (541-591)||(13769346-13769396)
chr3 (526-591)||(16045425-16045491)
chr3 (526-591)||(16060940-16061006)
chr3 (541-591)||(34715510-34715560)
chr3 (522-587)||(40769971-40770037)
chr3 (541-591)||(45443279-45443329)
chr3 (541-591)||(48685372-48685422)
chr3 (541-591)||(4256233-4256283)
chr3 (541-591)||(24860116-24860165)
chr3 (541-591)||(50203912-50203962)
chr3 (550-591)||(4029699-4029740)
chr3 (523-591)||(16051590-16051659)
chr3 (550-591)||(42258918-42258959)
chr3 (531-591)||(42576279-42576340)
chr3 (550-591)||(49477542-49477583)
chr3 (550-591)||(54495539-54495580)
[»] chr8 (29 HSPs)
chr8 (522-591)||(15711475-15711545)
chr8 (522-591)||(39587913-39587982)
chr8 (522-591)||(20232452-20232523)
chr8 (523-591)||(14019787-14019857)
chr8 (522-591)||(17607269-17607339)
chr8 (522-591)||(38287792-38287862)
chr8 (523-591)||(35908658-35908727)
chr8 (523-591)||(18464049-18464119)
chr8 (522-591)||(9596048-9596118)
chr8 (522-586)||(39588147-39588211)
chr8 (544-591)||(8276551-8276598)
chr8 (522-591)||(8605469-8605539)
chr8 (541-591)||(18905855-18905905)
chr8 (541-591)||(21085203-21085253)
chr8 (541-591)||(32931400-32931450)
chr8 (531-591)||(9596274-9596335)
chr8 (522-591)||(14582210-14582279)
chr8 (541-591)||(21653326-21653376)
chr8 (541-591)||(23027560-23027610)
chr8 (541-591)||(34248076-34248126)
chr8 (541-587)||(40754444-40754490)
chr8 (550-591)||(35561674-35561715)
chr8 (523-591)||(38288019-38288088)
chr8 (541-591)||(20298571-20298621)
chr8 (541-591)||(21653803-21653853)
chr8 (541-591)||(23027883-23027933)
chr8 (541-591)||(34248358-34248408)
chr8 (550-591)||(5720922-5720963)
chr8 (550-591)||(43599319-43599360)
[»] chr7 (43 HSPs)
chr7 (523-592)||(36092653-36092722)
chr7 (522-591)||(39550033-39550103)
chr7 (523-591)||(43384335-43384403)
chr7 (523-591)||(27585235-27585305)
chr7 (522-592)||(36092446-36092516)
chr7 (522-591)||(44314359-44314430)
chr7 (523-591)||(34748757-34748827)
chr7 (523-591)||(37530978-37531050)
chr7 (522-591)||(36270525-36270595)
chr7 (544-591)||(33909139-33909186)
chr7 (523-591)||(20296243-20296312)
chr7 (523-589)||(34914977-34915045)
chr7 (522-588)||(24240236-24240304)
chr7 (522-591)||(36495867-36495938)
chr7 (522-591)||(37755993-37756064)
chr7 (544-591)||(37756219-37756266)
chr7 (544-591)||(37761967-37762014)
chr7 (541-591)||(257322-257372)
chr7 (541-591)||(1663660-1663710)
chr7 (541-591)||(7135298-7135348)
chr7 (522-588)||(14742673-14742738)
chr7 (522-591)||(19843686-19843756)
chr7 (523-591)||(36495645-36495715)
chr7 (523-591)||(22206333-22206402)
chr7 (523-591)||(22228337-22228406)
chr7 (522-591)||(47346149-47346220)
chr7 (541-592)||(40121672-40121723)
chr7 (544-591)||(47346378-47346425)
chr7 (541-591)||(1661246-1661296)
chr7 (523-588)||(19843464-19843530)
chr7 (522-591)||(22686788-22686858)
chr7 (541-591)||(37272100-37272150)
chr7 (541-591)||(43167948-43167998)
chr7 (530-576)||(43384124-43384170)
chr7 (544-588)||(24240448-24240492)
chr7 (547-591)||(40121994-40122038)
chr7 (544-591)||(41670585-41670632)
chr7 (541-591)||(6960021-6960071)
chr7 (531-568)||(27729556-27729594)
chr7 (541-591)||(28910031-28910081)
chr7 (541-591)||(43288263-43288313)
chr7 (550-591)||(6813133-6813174)
chr7 (521-591)||(43384001-43384067)
[»] chr4 (40 HSPs)
chr4 (522-591)||(46528978-46529048)
chr4 (525-590)||(43798183-43798248)
chr4 (520-591)||(4026050-4026122)
chr4 (523-591)||(33912023-33912092)
chr4 (523-591)||(37288924-37288993)
chr4 (541-591)||(15665152-15665202)
chr4 (522-591)||(26941840-26941910)
chr4 (541-591)||(51469480-51469530)
chr4 (522-587)||(52810911-52810977)
chr4 (523-591)||(37097786-37097855)
chr4 (525-591)||(47845769-47845837)
chr4 (544-591)||(11290171-11290218)
chr4 (544-591)||(50868068-50868115)
chr4 (544-591)||(51470485-51470532)
chr4 (541-591)||(22867083-22867133)
chr4 (541-591)||(29669418-29669468)
chr4 (522-591)||(52810680-52810750)
chr4 (541-591)||(53740181-53740231)
chr4 (531-591)||(2016520-2016581)
chr4 (541-591)||(991203-991253)
chr4 (541-591)||(13254382-13254432)
chr4 (541-591)||(29669733-29669783)
chr4 (541-591)||(36558521-36558571)
chr4 (541-591)||(45426991-45427041)
chr4 (541-591)||(50858011-50858061)
chr4 (541-591)||(50858327-50858377)
chr4 (541-591)||(53739865-53739915)
chr4 (541-591)||(56509608-56509658)
chr4 (536-584)||(37288700-37288749)
chr4 (543-591)||(49544333-49544381)
chr4 (541-591)||(990546-990596)
chr4 (522-591)||(5427107-5427177)
chr4 (541-591)||(17222721-17222771)
chr4 (541-591)||(27048463-27048513)
chr4 (541-587)||(29734560-29734606)
chr4 (541-587)||(43972038-43972084)
chr4 (541-587)||(43972354-43972400)
chr4 (541-591)||(48843072-48843122)
chr4 (541-591)||(53738263-53738313)
chr4 (550-591)||(43943681-43943722)
[»] chr2 (50 HSPs)
chr2 (523-591)||(4506095-4506164)
chr2 (523-591)||(10862113-10862182)
chr2 (522-591)||(11349848-11349919)
chr2 (522-590)||(30622126-30622194)
chr2 (522-590)||(30624747-30624815)
chr2 (521-591)||(11350242-11350314)
chr2 (531-591)||(33532791-33532852)
chr2 (523-591)||(32810931-32811001)
chr2 (523-591)||(14280259-14280329)
chr2 (531-591)||(28193390-28193451)
chr2 (523-591)||(28193630-28193699)
chr2 (530-590)||(30665456-30665516)
chr2 (541-591)||(3976210-3976260)
chr2 (541-591)||(3976526-3976576)
chr2 (541-591)||(3977058-3977108)
chr2 (522-587)||(4342317-4342383)
chr2 (522-591)||(10861889-10861959)
chr2 (522-591)||(10862285-10862355)
chr2 (541-591)||(30166134-30166184)
chr2 (541-591)||(43169241-43169291)
chr2 (530-590)||(30667879-30667939)
chr2 (544-591)||(936814-936861)
chr2 (544-591)||(15962212-15962259)
chr2 (520-582)||(32196887-32196950)
chr2 (544-591)||(39420699-39420746)
chr2 (541-591)||(6183421-6183471)
chr2 (541-591)||(11969051-11969101)
chr2 (541-591)||(18901919-18901969)
chr2 (541-591)||(21213940-21213990)
chr2 (544-589)||(36161403-36161449)
chr2 (541-586)||(15820161-15820206)
chr2 (523-582)||(17324085-17324145)
chr2 (543-591)||(25441697-25441745)
chr2 (543-591)||(43688476-43688524)
chr2 (522-582)||(15961864-15961926)
chr2 (544-591)||(44266363-44266410)
chr2 (541-591)||(7877843-7877893)
chr2 (545-591)||(17325173-17325219)
chr2 (523-580)||(17326097-17326155)
chr2 (541-591)||(21214256-21214306)
chr2 (541-591)||(23054325-23054375)
chr2 (545-591)||(43195787-43195833)
chr2 (550-591)||(883656-883697)
chr2 (550-591)||(884065-884106)
chr2 (550-591)||(3435541-3435582)
chr2 (550-591)||(6986471-6986512)
chr2 (550-591)||(12419846-12419887)
chr2 (550-591)||(12431906-12431947)
chr2 (550-591)||(12432113-12432154)
chr2 (550-591)||(17727412-17727453)
[»] chr1 (36 HSPs)
chr1 (523-591)||(18585018-18585087)
chr1 (523-591)||(45443200-45443269)
chr1 (522-591)||(51722231-51722302)
chr1 (523-591)||(40642831-40642903)
chr1 (522-591)||(17294956-17295027)
chr1 (532-591)||(20208137-20208196)
chr1 (532-591)||(20208436-20208495)
chr1 (523-591)||(28509442-28509514)
chr1 (523-591)||(29383678-29383747)
chr1 (519-591)||(40521548-40521621)
chr1 (523-591)||(45858635-45858704)
chr1 (541-591)||(2697386-2697436)
chr1 (541-591)||(4022180-4022230)
chr1 (541-591)||(19937098-19937148)
chr1 (531-591)||(12287836-12287897)
chr1 (524-591)||(27958102-27958170)
chr1 (522-591)||(29228653-29228724)
chr1 (544-591)||(4187337-4187384)
chr1 (544-591)||(4187568-4187615)
chr1 (541-591)||(8520148-8520198)
chr1 (541-591)||(17419786-17419836)
chr1 (522-578)||(17294845-17294903)
chr1 (544-591)||(27957864-27957911)
chr1 (544-591)||(29228450-29228497)
chr1 (544-591)||(30604515-30604562)
chr1 (544-591)||(31411615-31411662)
chr1 (523-591)||(33562182-33562252)
chr1 (544-591)||(38474285-38474332)
chr1 (541-591)||(31305710-31305760)
chr1 (522-579)||(45858858-45858916)
chr1 (541-591)||(33879833-33879883)
chr1 (541-591)||(33964372-33964422)
chr1 (541-591)||(40664209-40664259)
chr1 (541-591)||(43423278-43423328)
chr1 (541-591)||(45264662-45264712)
chr1 (550-591)||(39649139-39649180)
[»] chr6 (28 HSPs)
chr6 (522-591)||(23591509-23591578)
chr6 (523-591)||(26842699-26842769)
chr6 (521-591)||(26339897-26339968)
chr6 (544-591)||(33396309-33396356)
chr6 (523-591)||(27577839-27577905)
chr6 (523-591)||(27582124-27582192)
chr6 (523-591)||(25183982-25184052)
chr6 (532-591)||(27443592-27443651)
chr6 (541-591)||(8144016-8144066)
chr6 (541-591)||(21067112-21067162)
chr6 (541-591)||(21088903-21088953)
chr6 (541-591)||(24055164-24055214)
chr6 (523-591)||(27311239-27311307)
chr6 (522-591)||(33396504-33396574)
chr6 (544-591)||(25184212-25184259)
chr6 (541-591)||(12134538-12134588)
chr6 (541-591)||(19753659-19753709)
chr6 (541-591)||(21043836-21043886)
chr6 (523-591)||(13673835-13673904)
chr6 (541-580)||(1409010-1409049)
chr6 (524-591)||(5613406-5613473)
chr6 (523-590)||(27313366-27313433)
chr6 (541-591)||(31928-31978)
chr6 (541-591)||(10418393-10418443)
chr6 (549-591)||(16194027-16194069)
chr6 (545-591)||(17096753-17096799)
chr6 (541-591)||(19054492-19054542)
chr6 (541-591)||(30539234-30539284)
[»] chr5 (34 HSPs)
chr5 (523-591)||(14769887-14769956)
chr5 (528-591)||(39668472-39668535)
chr5 (522-591)||(22196608-22196678)
chr5 (523-591)||(2471748-2471817)
chr5 (522-588)||(33040263-33040331)
chr5 (541-592)||(873750-873801)
chr5 (525-591)||(22196381-22196448)
chr5 (544-591)||(30329838-30329885)
chr5 (522-591)||(19439839-19439909)
chr5 (522-590)||(33040448-33040518)
chr5 (521-591)||(83865-83937)
chr5 (542-591)||(38131764-38131813)
chr5 (544-591)||(84089-84136)
chr5 (521-583)||(18541928-18541991)
chr5 (541-588)||(27760074-27760121)
chr5 (544-591)||(32395369-32395416)
chr5 (541-591)||(1028148-1028198)
chr5 (522-591)||(9850448-9850522)
chr5 (522-588)||(17584340-17584405)
chr5 (541-591)||(37995689-37995739)
chr5 (522-591)||(18541702-18541771)
chr5 (541-591)||(13843696-13843746)
chr5 (541-591)||(13844012-13844062)
chr5 (545-591)||(24792321-24792367)
chr5 (542-591)||(28009852-28009901)
chr5 (522-591)||(29396398-29396469)
chr5 (544-591)||(5095951-5095998)
chr5 (541-591)||(29432411-29432461)
chr5 (541-591)||(30588056-30588106)
chr5 (550-591)||(395375-395416)
chr5 (554-591)||(30870940-30870977)
chr5 (550-591)||(35527043-35527084)
chr5 (550-591)||(38376739-38376780)
chr5 (550-591)||(43490311-43490352)
[»] scaffold0012 (1 HSPs)
scaffold0012 (522-591)||(165763-165833)
[»] scaffold0003 (1 HSPs)
scaffold0003 (532-591)||(43710-43769)
[»] scaffold0785 (1 HSPs)
scaffold0785 (544-591)||(3175-3222)
[»] scaffold0166 (1 HSPs)
scaffold0166 (545-591)||(34704-34750)
[»] scaffold0013 (1 HSPs)
scaffold0013 (522-553)||(18290-18321)
[»] scaffold0029 (1 HSPs)
scaffold0029 (550-591)||(76860-76901)


Alignment Details
Target: chr3 (Bit Score: 465; Significance: 0; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 7 - 672
Target Start/End: Complemental strand, 51735193 - 51734532
Alignment:
Q  7 agtgattaccaacttttgtatacctacttggtcnnnnnnnnttagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttcattt 106  Q
    ||||||||||||||||||||| ||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51735193 agtgattaccaacttttgtattcctacttggtaaaaaaaaattagaagacttcacattcaaaattatatttcttatttacagtttcctgtgtgttcattt 51735094  T
Q  107 atatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgatttacatggattatgnnnn 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  51735093 atatatgtaattgtaaacatcagtggaaataaacttacatgcaaaaaacttgagagataaactaagggtaacatgacatgatttacatggattat--ttt 51734996  T
Q  207 nnnnnnnnaaacnnnnnnncttattttaactcaacaatctgaagaagatcaagttaagagtccgccattgttgtaaataaatctgtacttaatttcaggt 306  Q
            ||||       ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  51734995 tttttttcaaacaaaaaaacttattttaactcaacaatctgaagaagatcaagttaagagtcagccattgttgtaaataaatctgtacttaatttcaggt 51734896  T
Q  307 gaataaaagtaaannnnnnnngagtcctatctaataaacttgatcactttgagtttactttatcactttatcattttgaccagnnnnnnncaccccacaa 406  Q
    |||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  51734895 gaataaaagtaaattttttt-gagtcctatctaataaacttgatcactttgagtttactttatcactttatcattttgaccagaaaaaaacaccccacaa 51734797  T
Q  407 tttctttttgttatatatctcatttgaggcttataacctcaatcctgagtttgctagctctaatttttaagccatgtttgaacccatatctcaatgttaa 506  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51734796 tttatttttgttatatatctcatttgaggcttataacctcaatcctgagtttgctagctctaatttttaagccatgtttgaacccatatctcaatgttaa 51734697  T
Q  507 aagtaagaacttaaggtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat-aggagtatgagttag 605  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  51734696 aagtaagaacttaaggtgttagcagccaacactcggtggatttagtcccacatcggatagataggattcttgagaagagtttataaggagtatgagttag 51734597  T
Q  606 gcctggatttacgtgacatgaggaacctacaaattatatgtggtggtgtccccacagaacagaacac 672  Q
    |||| ||||||| |||||| ||||||||||||||||||||||   |||||||||||  |||||||||    
T  51734596 gcctcgatttacttgacataaggaacctacaaattatatgtg--tgtgtccccacaagacagaacac 51734532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 10453827 - 10453758
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  10453827 gtgttagcagccaacacttggtggatttagtcccagatcggatagataggattcttgagaagggtttata 10453758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 15820730 - 15820660
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  15820730 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 15820660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 2800085 - 2800016
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  2800085 gtgttaggagctaacactcggtggatttagtcccacatcggatagataggattcttaagatgagtttata 2800016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 10450775 - 10450703
Alignment:
Q  521 ggtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  10450775 ggtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 10450703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 10450550 - 10450479
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  10450550 gtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 10450479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 587
Target Start/End: Complemental strand, 10454008 - 10453944
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||||||    
T  10454008 tgttagcagccaacactcagtggatttagtcccacatcggataaataggattcatgagaagagtt 10453944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 22666442 - 22666373
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| ||||| || || ||||||||||||| |||||||||| ||||||||||||||||||||||    
T  22666442 gtgttagcagtcaacattcagtagatttagtcccacgtcggatagataggattcttgagaagagtttata 22666373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 24453758 - 24453827
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||| || |||||||||||||||||||    
T  24453758 tgttagcggccaacactcgaggggatttagtcccacatcggatagatagggttcttgagaagagtttata 24453827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 48837132 - 48837063
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||| ||||    
T  48837132 tgttagctgccaacactcggtgggatttagtcccacatcggatagataggattattgagaagagtatata 48837063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 5321659 - 5321591
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||  || |||||||||||||||||||||||| ||||| |||| |||||||||||    
T  5321659 tgttagcagccaacactatgtagatttagtcccacatcggatagataggatttttgaaaagagtttata 5321591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 53966211 - 53966282
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  53966211 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 53966282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 11244666 - 11244596
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11244666 tgttagcagtcaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 11244596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 9180347 - 9180417
Alignment:
Q  522 gtgttagcagccaacactcggt-ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||| | ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  9180347 gtgttagcggccaaccctcgatcggatttagtcccacatcggatagataggattcttgagaaaagtttata 9180417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 54369038 - 54369088
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  54369038 ggtggatttagtcccacatcggatagataggactcttgagaagagtttata 54369088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 9178895 - 9178956
Alignment:
Q  531 gccaacactcggtgga-tttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||    
T  9178895 gccaacactcggtggaatttagtcccatatcggatagataggattcttaagaagagtttata 9178956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 524 - 591
Target Start/End: Original strand, 9179114 - 9179182
Alignment:
Q  524 gttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||   ||||| |||||||||||||||    
T  9179114 gttagcggccaacactcggtgggatttagtcccacatcggatagacatgattcatgagaagagtttata 9179182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 48511536 - 48511465
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48511536 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttata 48511465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 48511741 - 48511694
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  48511741 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 48511694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 27219328 - 27219378
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  27219328 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 27219378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 41380723 - 41380773
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  41380723 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 41380773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 43101476 - 43101426
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  43101476 ggtggatttagtcccacatcagatagataggactcttgagaagagtttata 43101426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 44573325 - 44573375
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  44573325 ggtggatttagtcccacatcggatagatagtactcttgagaagagtttata 44573375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 47833767 - 47833717
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| |||||||||| |||||||    
T  47833767 ggtggatttagtcccacatcggatagataggactcttgagaagtgtttata 47833717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 10856750 - 10856681
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||| ||| ||||| ||||||||||||||||||| ||| |||||||||| |||||||||||    
T  10856750 tgttagcggccaatacttggtgggatttagtcccacatcggatggataggattcttgaaaagagtttata 10856681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 42190578 - 42190531
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  42190578 ggatttaatcccacatcggatagataggaatcttgagaagagtttata 42190531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 3985772 - 3985822
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||  || | ||||||||||||||||    
T  3985772 ggtggatttagtcccacatcggatagatatgacttttgagaagagtttata 3985822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 13769396 - 13769346
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  13769396 ggtggatttagtcccacattggatagatagcactcttgagaagagtttata 13769346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 16045491 - 16045425
Alignment:
Q  526 tagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||| ||||||||||| ||| |||||||||||||||||||| ||   ||||||||||||||||||||    
T  16045491 tagcggccaacactcgatgggatttagtcccacatcggatatataatattcttgagaagagtttata 16045425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 526 - 591
Target Start/End: Complemental strand, 16061006 - 16060940
Alignment:
Q  526 tagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||| ||||||||||| ||| |||||||||||||||||||| ||   ||||||||||||||||||||    
T  16061006 tagcggccaacactcgatgggatttagtcccacatcggatatataatattcttgagaagagtttata 16060940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 34715560 - 34715510
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | | ||||||||||||||||    
T  34715560 ggtggatttagtcccacatcggatagatagcacttttgagaagagtttata 34715510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 40770037 - 40769971
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||  |||| ||| ||||||||    
T  40770037 gtgttagcggccaacactcgaggggatttagtcccacatcggatagatatgattattgtgaagagtt 40769971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 45443279 - 45443329
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  45443279 ggtggatttagtcccacattggatagatagcactcttgagaagagtttata 45443329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 48685422 - 48685372
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| || | | ||||||||||||||||||    
T  48685422 ggtggatttagtcccacatcggatatatagtactcttgagaagagtttata 48685372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 4256233 - 4256283
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||| |||   | ||||||||||||||||||    
T  4256233 ggtggatttagtcccacatcggatggataacactcttgagaagagtttata 4256283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 24860165 - 24860116
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||| |||||||||| || ||| ||||||||||||||||||    
T  24860165 ggtggatttagtcc-acatcggataaataggactcttgagaagagtttata 24860116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 50203962 - 50203912
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||| ||||||| ||||||||||||||  || ||||||||||||||||||    
T  50203962 ggtgggtttagtctcacatcggatagataagactcttgagaagagtttata 50203912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 4029740 - 4029699
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  4029740 agtcccacatcggatagataagactcttgagaagagtttata 4029699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 16051659 - 16051590
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||  ||| ||||||||||||||| |||| ||   ||||||||||||||||||||    
T  16051659 tgttagcggccaacactcaatgggatttagtcccacatcagatatataatattcttgagaagagtttata 16051590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 42258918 - 42258959
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  |||||||||||||||| ||||    
T  42258918 agtcccacatcggatagataagattcttgagaagagtatata 42258959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 42576279 - 42576340
Alignment:
Q  531 gccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||| ||||| ||||||||||||||||||| |||  ||||||  |||||||||||||    
T  42576279 gccaacacttggtgggatttagtcccacatcggattgataagattctcaagaagagtttata 42576340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 49477542 - 49477583
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  49477542 agtcccacatcggatagataagactcttgagaagagtttata 49477583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 54495539 - 54495580
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  54495539 agtcccacatcggatagataagactcttgagaagagtttata 54495580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 15711475 - 15711545
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  15711475 gtgttagcagccaacactcggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 15711545  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 39587982 - 39587913
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||| ||||||||||||||    
T  39587982 gtgttagcagccaacactcagtggatttagtcccacatcagatggataggattctagagaagagtttata 39587913  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 20232523 - 20232452
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||    
T  20232523 gtgttagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttgagaagagtttata 20232452  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 14019787 - 14019857
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  14019787 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 14019857  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 17607339 - 17607269
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  17607339 gtgttagcggccaacactcgagtggatttagtctcacatcggatagataggattcttgtgaagagtttata 17607269  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 38287862 - 38287792
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||    
T  38287862 gtgttaggggccaacactcggtgggatttagtcccacatcggatagataggattcttgataagagtttata 38287792  T

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Target: chr8; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 35908658 - 35908727
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  35908658 tgttagcggccaacactcggtgggatttagtcccacatcgggtagataggatacttgagaagagtttata 35908727  T

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Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 18464049 - 18464119
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||   ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  18464049 tgttagcggccaacactcgggtgggatttagtcccacatcagatagataggattcttgagaagagtttata 18464119  T

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Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 9596118 - 9596048
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||| | ||||||    
T  9596118 gtgttagcggccaacactcggtgggatttagttccacatcggatagataggattcttgagaatattttata 9596048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 39588211 - 39588147
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagt 586  Q
    |||||||||||||||||||  |||||||||||||||| | ||||||| ||||| |||||||||||    
T  39588211 gtgttagcagccaacactcaatggatttagtcccacaacagatagataggatttttgagaagagt 39588147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 8276551 - 8276598
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  8276551 ggatttagtcccacattggatagataggattcttgagaagagtttata 8276598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 8605469 - 8605539
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||||  |||||||| ||| ||||||| || ||||||||||||||||||||||    
T  8605469 gtgttagcggccaacactcggtgacatttagtctcacgtcggataaataggattcttgagaagagtttata 8605539  T

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Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 18905855 - 18905905
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  18905855 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 18905905  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21085253 - 21085203
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  21085253 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 21085203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 32931400 - 32931450
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  32931400 ggtggatttagtcccacatcggatagatatcattcttgagaagagtttata 32931450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 9596335 - 9596274
Alignment:
Q  531 gccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||| |||||||| || |||||||||||  |||||||||||||||||||||    
T  9596335 gccaacactcggtgggatttagtctcatatcggatagataagattcttgagaagagtttata 9596274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 14582210 - 14582279
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||  ||||||||||||||||||  |||| ||  ||| |||||||||||||||||    
T  14582210 gtgttagcagccaacactaagtggatttagtcccacatttgataaatatgatacttgagaagagtttata 14582279  T

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Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 21653326 - 21653376
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| |   ||||||||||||||||||    
T  21653326 ggtggatttagtcccacatcggatagatagtgctcttgagaagagtttata 21653376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 23027610 - 23027560
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  23027610 ggtggatttagtcccacatcagatagatagaactcttgagaagagtttata 23027560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 34248076 - 34248126
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| ||||| ||| |||||| |||||||||||    
T  34248076 ggtggatttagtcccacatcggttagataggactcttgataagagtttata 34248126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 40754444 - 40754490
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||||| ||||||||||||| ||||||||||| ||||||||||||||    
T  40754444 ggtggacttagtcccacatcagatagatgggactcttgagaagagtt 40754490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 35561674 - 35561715
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  35561674 agtcccacatcggatagataagattcttgagaagagtttata 35561715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 38288088 - 38288019
Alignment:
Q  523 tgttagcagccaacactcggtg-gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| ||||||||| ||| |   |||||| ||||| ||||||||||||||||    
T  38288088 tgttagcagccaacactcggtgagatttagtcacacgttaaatagataggatttttgagaagagtttata 38288019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 20298621 - 20298571
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  |||||||   ||||||||||||||||||||    
T  20298621 ggtggatttagtcccacatttgatagatattattcttgagaagagtttata 20298571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 21653803 - 21653853
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| |   ||||||||| ||||||||    
T  21653803 ggtggatttagtcccacatcggatagatagtgctcttgagaaaagtttata 21653853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 23027933 - 23027883
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| | | |||||||||||| |||||    
T  23027933 ggtggatttagtcccacataggatagatagaactcttgagaagagcttata 23027883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 34248358 - 34248408
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| || ||||| ||| |||||| |||||||||||    
T  34248358 ggtggatttagtcccacattggttagataggactcttgataagagtttata 34248408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 5720963 - 5720922
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  5720963 agtcccacatcggatagataagactcttgagaagagtttata 5720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 43599319 - 43599360
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43599319 agtcccacatcggatagataagactcttgagaagagtttata 43599360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 592
Target Start/End: Complemental strand, 36092722 - 36092653
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttatag 592  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  36092722 tgttagccgccaacactcggtgtatttagtcccacatcggatagataggattcttgagaagagtttatag 36092653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 39550103 - 39550033
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  39550103 gtgttagcggccaacactcggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 39550033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 43384403 - 43384335
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43384403 tgttagcagccaacactcaacggatttagtcccacatcggatagataggattcttgagaagagtttata 43384335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 27585235 - 27585305
Alignment:
Q  523 tgttagcagccaacactc-ggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  27585235 tgttagcagccaacactcaggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 27585305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 522 - 592
Target Start/End: Complemental strand, 36092516 - 36092446
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttatag 592  Q
    ||||||||| ||||||||| |||||||||||||||||| ||||||||  ||||||||||||||||||||||    
T  36092516 gtgttagcaaccaacactcagtggatttagtcccacattggatagatatgattcttgagaagagtttatag 36092446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 44314430 - 44314359
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||    
T  44314430 gtgttagcggccaacactcgggtgggatttagtcccacatcggatagatgagattcttgagaagagtttata 44314359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 34748757 - 34748827
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34748757 tgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 34748827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 37531050 - 37530978
Alignment:
Q  523 tgttagcagccaacactc----ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||    ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  37531050 tgttagcagccaacactcactgggtggatttagtcccacgtcggatagataggattcttgagaagagtttata 37530978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 36270595 - 36270525
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  36270595 gtgttagcggtcaacactcggtgggatttagtcccacatcggatagataggattcttgagacgagtttata 36270525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 33909139 - 33909186
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33909139 ggatttagtcccacatcggatagataggattcttgagaagagtttata 33909186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 20296243 - 20296312
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||| | |||||||||||||||| |||||||  ||||||||||||||||||||||    
T  20296243 tgttagcggccaacactcgaggggatttagtcccacattggatagagaggattcttgagaagagtttata 20296312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 589
Target Start/End: Complemental strand, 34915045 - 34914977
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagttta 589  Q
    |||||||||||| |||||||   ||||||||||||||||||||||||  ||||||||||||||||||||    
T  34915045 tgttagcagccagcactcgggtgggatttagtcccacatcggatagacaggattcttgagaagagttta 34914977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 588
Target Start/End: Complemental strand, 24240304 - 24240236
Alignment:
Q  522 gtgttagcagccaacactc-ggtgg-atttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  24240304 gtgttagcagccaactctcaggtgggatttagtcccacatcggatagataggaatcttgagaagagttt 24240236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 36495867 - 36495938
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36495867 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggattcttgagaatagtttata 36495938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 37756064 - 37755993
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  37756064 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttata 37755993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 37756266 - 37756219
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  37756266 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 37756219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 37762014 - 37761967
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  37762014 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 37761967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 257372 - 257322
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  257372 ggtggatttagtcccacatcggatagatattattcttgagaagagtttata 257322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 1663710 - 1663660
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  1663710 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 1663660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 7135348 - 7135298
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  7135348 ggtggatttagtcacacatcggatagataggactcttgagaagagtttata 7135298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 588
Target Start/End: Complemental strand, 14742738 - 14742673
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    ||||||||||||||||||  ||||||||||| |||||| ||||||||  ||||||||||||||||||    
T  14742738 gtgttagcagccaacactaagtggatttagt-ccacattggatagatatgattcttgagaagagttt 14742673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 19843686 - 19843756
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||||||||  || ||||||||||| ||| ||||||| ||||||||||||||||||||||    
T  19843686 gtgttagcggccaacactcgaagggatttagtcccaaatcagatagataggattcttgagaagagtttata 19843756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 36495645 - 36495715
Alignment:
Q  523 tgttagcagccaacactcgg-tgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| |||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  36495645 tgttagcggccaactctcgggtggcatttagtcccacatcggatagataggattcttgagaatagtttata 36495715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 22206402 - 22206333
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| || | |||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  22206402 tgttagcggcaatcactcggtgggatttagtcccacatcgaatagataggattcttgagaaaagtttata 22206333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 22228337 - 22228406
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| || | |||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||||    
T  22228337 tgttagcggcaatcactcggtgggatttagtcccacatcgaatagataggattcttgagaaaagtttata 22228406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 47346220 - 47346149
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||| ||||||| ||| ||||||||||||||||||    
T  47346220 gtgttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttgagaagagtttata 47346149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 40121723 - 40121672
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttatag 592  Q
    |||||||||||| ||||||||||||||| | | |||||||||||||||||||    
T  40121723 ggtggatttagttccacatcggatagatagtactcttgagaagagtttatag 40121672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 47346425 - 47346378
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  47346425 ggatttagtcccacatcggaaagataggaatcttgagaagagtttata 47346378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 1661296 - 1661246
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||   | ||||||||||||||||||    
T  1661296 ggtggatttagtcccacatcggatagataaaactcttgagaagagtttata 1661246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 523 - 588
Target Start/End: Original strand, 19843464 - 19843530
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    ||||||| ||||||||||| | ||||| ||||||| ||||||||||| ||||| |||||||||||||    
T  19843464 tgttagcggccaacactcgaggggattaagtcccaaatcggatagataggattattgagaagagttt 19843530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 22686858 - 22686788
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| | ||||||||| | ||||||| |||||||||||||| || |||||||||| |||||||||||    
T  22686858 gtgttagcggtcaacactcgaggggatttaatcccacatcggataaataggattcttgaaaagagtttata 22686788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 37272150 - 37272100
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| ||||| ||| |||||| |||||||||||    
T  37272150 ggtggatttagtcccacatcggttagataggactcttgataagagtttata 37272100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 43167998 - 43167948
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  43167998 ggtggatttagtcccaaatcggatagatagcactcttgagaagagtttata 43167948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 530 - 576
Target Start/End: Complemental strand, 43384170 - 43384124
Alignment:
Q  530 agccaacactcggtggatttagtcccacatcggatagatgggattct 576  Q
    ||||||||||||||||||||||||||||||| || |||| |||||||    
T  43384170 agccaacactcggtggatttagtcccacatcagacagataggattct 43384124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 544 - 588
Target Start/End: Complemental strand, 24240492 - 24240448
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||    
T  24240492 ggatttagtcccacatcggatagataggaatcttaagaagagttt 24240448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 591
Target Start/End: Complemental strand, 40122038 - 40121994
Alignment:
Q  547 tttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| | | ||||||||||||||||||    
T  40122038 tttagtcccacatcggatagatagtactcttgagaagagtttata 40121994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 41670585 - 41670632
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||| |||||| | | ||||||||||||||||||    
T  41670585 ggatttagtcccacatcgaatagatagtactcttgagaagagtttata 41670632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 6960071 - 6960021
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||| ||||||||| ||||| ||| |||||| |||||||||||    
T  6960071 ggtggatttagttccacatcggttagataggactcttgataagagtttata 6960021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 531 - 568
Target Start/End: Complemental strand, 27729594 - 27729556
Alignment:
Q  531 gccaacactcggtgg-atttagtcccacatcggatagat 568  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  27729594 gccaacactcggtgggatttagtcccacatcggatagat 27729556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 28910031 - 28910081
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  ||||||| ||| ||||| ||||||||||||    
T  28910031 ggtggatttagtcccacataagatagataggactcttgggaagagtttata 28910081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 43288263 - 43288313
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| ||||||||||| ||||| ||| |||||| |||||||||||    
T  43288263 ggtggatttactcccacatcggttagataggactcttgataagagtttata 43288313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 6813174 - 6813133
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||| ||||||  ||||||||||    
T  6813174 agtcccacatcggatagatgggactcttgatgagagtttata 6813133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 43384067 - 43384001
Alignment:
Q  521 ggtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||| |    ||||||||||||||||||||| ||| |||||  |||||||||||    
T  43384067 ggtgttaacagccaacactcgtt----ttagtcccacatcggatagataggagtcttgcaaagagtttata 43384001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 46529048 - 46528978
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  46529048 gtgttagcagccaacactcggtgggatttagtctcacatcggatagattggattcttgagaagagtttata 46528978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 525 - 590
Target Start/End: Complemental strand, 43798248 - 43798183
Alignment:
Q  525 ttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    |||| ||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||    
T  43798248 ttagtagccaacactcagtggatttagtcccacatcggatatataggattcttgagaagagtttat 43798183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 520 - 591
Target Start/End: Original strand, 4026050 - 4026122
Alignment:
Q  520 aggtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| || |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  4026050 aggtgttggcggccaacactcagtgggatttagtcccacatcggatagataggattcttgagaagagtttata 4026122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 33912023 - 33912092
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| |||||||||||||||||    
T  33912023 tgttagcggccaacactcggtgggatttagtcccacatcgggtagataggatacttgagaagagtttata 33912092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 37288993 - 37288924
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||||  |||||||||||||||||||||    
T  37288993 tgttagctgccaacaatcggtgggatttagtcccacatcggatagatatgattcttgagaagagtttata 37288924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 15665152 - 15665202
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  15665152 ggtggatttagtcccacatcggatagataggactcttgagaagagtttata 15665202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 26941840 - 26941910
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||||| |||||||||||||||| |||||| | || |||||||||||||||||    
T  26941840 gtgttagcggccaacactcggtgggatttagtcccacatcgaatagatagtatccttgagaagagtttata 26941910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 51469480 - 51469530
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  51469480 ggtggatttagtcccacatcggatagataggactcttgagaagagtttata 51469530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 52810977 - 52810911
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  52810977 gtgttagcggccaacactcggtgggatttagtcccacatcggatagaaaagattcttgagaagagtt 52810911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 37097855 - 37097786
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||  |||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  37097855 tgttagcgaccaacactcggtgggatttagtcccacatcagatagataggattcttgagaagattttata 37097786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 525 - 591
Target Start/End: Original strand, 47845769 - 47845837
Alignment:
Q  525 ttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||   |||||||||||||| |||||||||| || |||||||||||||||||||    
T  47845769 ttagcagccaacactcgggtgggatttagtcccacgtcggatagataggtttcttgagaagagtttata 47845837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 11290171 - 11290218
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  11290171 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 11290218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 50868115 - 50868068
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  50868115 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 50868068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 51470485 - 51470532
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  51470485 ggatttagtcccacatcggatagataggactcttgagaagagtttata 51470532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 22867083 - 22867133
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  22867083 ggtggatttagtcccacgtcggatagataggactcttgagaagagtttata 22867133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 29669468 - 29669418
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  29669468 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 29669418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 52810750 - 52810680
Alignment:
Q  522 gtgttagcagccaacactcggtgga-tttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||  |||| |||||||| |||||||||||||  |||||||||||||||||||||    
T  52810750 gtgttagcggccaacactcaatggaatttagtcctacatcggatagataagattcttgagaagagtttata 52810680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 53740181 - 53740231
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  53740181 ggtggatttagtcccacatcggatagatagtactcttgagaagagtttata 53740231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 2016520 - 2016581
Alignment:
Q  531 gccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| | |||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  2016520 gccaacactcgaggggatttagtctcacatcagatagataggattcttgagaagagtttata 2016581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 991203 - 991253
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||   | ||||||||||||||||||    
T  991203 ggtggatttagtcccacatcggatagataacactcttgagaagagtttata 991253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 13254382 - 13254432
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  13254382 ggtggatttagtcccacattggatagataggactattgagaagagtttata 13254432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 29669783 - 29669733
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  29669783 ggtggatttagtcccacatcagatagatagcactcttgagaagagtttata 29669733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 36558571 - 36558521
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||  || | ||||||||||||||||    
T  36558571 ggtggatttagtcccacatcggatagatatgacttttgagaagagtttata 36558521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 45427041 - 45426991
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| |||||||||||||||| | | ||||||||||||||||||    
T  45427041 ggtggatttagccccacatcggatagatagtactcttgagaagagtttata 45426991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 50858011 - 50858061
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||| ||||||    
T  50858011 ggtggatttagtcccacatcggatagatagtactcttgagaagattttata 50858061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 50858327 - 50858377
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  50858327 ggtggatttagtcccacatcagatagatagtactcttgagaagagtttata 50858377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 53739865 - 53739915
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  53739865 ggtggatttagtcccatatcggatagatagtactcttgagaagagtttata 53739915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 56509608 - 56509658
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||| ||||||||||||| |||  |||||||||||||||||    
T  56509608 ggtggatttagtcctacatcggatagataggacccttgagaagagtttata 56509658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 536 - 584
Target Start/End: Complemental strand, 37288749 - 37288700
Alignment:
Q  536 cactcggtgg-atttagtcccacatcggatagatgggattcttgagaaga 584  Q
    |||||||||| |||| ||||||||||||||||||| ||||||||||||||    
T  37288749 cactcggtgggattttgtcccacatcggatagatgagattcttgagaaga 37288700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 49544333 - 49544381
Alignment:
Q  543 tggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| || |||||||||||||||  |||||||||||||||||||||    
T  49544333 tggattttgttccacatcggatagataagattcttgagaagagtttata 49544381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 990546 - 990596
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||| |||||||||||||||||||||||   | ||||||||||||||||||    
T  990546 ggtgaatttagtcccacatcggatagataacactcttgagaagagtttata 990596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 5427107 - 5427177
Alignment:
Q  522 gtgttagcagccaacactcggtgga-tttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||| |||||  ||||| ||||||| ||||||||  |||| ||||||||||||||||    
T  5427107 gtgttagcggccaacacttggtggggtttagccccacattggatagataagatttttgagaagagtttata 5427177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 17222771 - 17222721
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| | | |||| |||||||||||||    
T  17222771 ggtggatttagtcccacataggatagatagcactcttaagaagagtttata 17222721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 27048513 - 27048463
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| ||||| |||  ||||| |||||||||||    
T  27048513 ggtggatttagtcccacatcggttagataggaagcttgataagagtttata 27048463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 29734560 - 29734606
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||| ||||||||||||||||||||||| ||| | ||||||||||||    
T  29734560 ggtgaatttagtcccacatcggatagataggacttttgagaagagtt 29734606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 43972038 - 43972084
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    ||||||||||||||||| | |||||||| ||| ||||||||||||||    
T  43972038 ggtggatttagtcccacgttggatagataggactcttgagaagagtt 43972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 587
Target Start/End: Original strand, 43972354 - 43972400
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||| ||||||||||||||||||||||| ||| ||||||||| ||||    
T  43972354 ggtgaatttagtcccacatcggatagataggactcttgagaaaagtt 43972400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 48843122 - 48843072
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||| |||| ||||||| ||| |||||| |||||||||||    
T  48843122 ggtggatttagtcccgcatcagatagataggactcttgaaaagagtttata 48843072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 53738313 - 53738263
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| | ||||||  || ||||||||||||||||||    
T  53738313 ggtggatttagtcccacatagaatagataagactcttgagaagagtttata 53738263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 43943681 - 43943722
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43943681 agtcccacatcggatagataagactcttgagaagagtttata 43943722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 50)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 4506164 - 4506095
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  4506164 tgttagctgccaacactcggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 4506095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 10862182 - 10862113
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10862182 tgttagcggccaacactcgaggggatttagtcccacatcggatagataggattcttgagaagagtttata 10862113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 11349919 - 11349848
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  11349919 gtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 11349848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 590
Target Start/End: Complemental strand, 30622194 - 30622126
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    |||||| |||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||    
T  30622194 gtgttaacagccaacactcggtggatttaattccacttcggatagataggattcttgagaagagtttat 30622126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 590
Target Start/End: Complemental strand, 30624815 - 30624747
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    |||||| |||||||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||    
T  30624815 gtgttaacagccaacactcggtggatttaattccacttcggatagataggattcttgagaagagtttat 30624747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 11350314 - 11350242
Alignment:
Q  521 ggtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||   ||||||||||||| ||||||||||| || |||||||||||||||||||    
T  11350314 ggtgttagcagccaacactcgggtgggatttagtcccatatcggatagataggtttcttgagaagagtttata 11350242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 33532852 - 33532791
Alignment:
Q  531 gccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33532852 gccaacactcgaggggatttagtcccacatcggatagataggattcttgagaagagtttata 33532791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 32811001 - 32810931
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||| |||||||||| |||||||||||    
T  32811001 tgttagcagccaacactcgggtgggatttagtcccgcatcggatagataggattcttgataagagtttata 32810931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 14280259 - 14280329
Alignment:
Q  523 tgttagcagccaacactc-ggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||||||||||    
T  14280259 tgttagcagccaacactcaggtgggatttagtcccacattggatagataggattcatgagaagagtttata 14280329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 591
Target Start/End: Complemental strand, 28193451 - 28193390
Alignment:
Q  531 gccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| | |||||||||| |||||||||||||| ||||||||||||||||||||||    
T  28193451 gccaacactcgaggggatttagtctcacatcggatagataggattcttgagaagagtttata 28193390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 28193699 - 28193630
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  28193699 tgttagcggccaacactcgaggggatttagtcccacatcagatagataggattcttgagaagattttata 28193630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 530 - 590
Target Start/End: Complemental strand, 30665516 - 30665456
Alignment:
Q  530 agccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    ||||||||||||||| |||| || |||| |||||||||| |||||||||||||||||||||    
T  30665516 agccaacactcggtgaattttgttccacctcggatagataggattcttgagaagagtttat 30665456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 3976260 - 3976210
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  3976260 ggtggatttagtcccacatcggatagatagtactcttgagaagagtttata 3976210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 3976576 - 3976526
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  3976576 ggtggatttagtcccacatcggatagataatattcttgagaagagtttata 3976526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 3977108 - 3977058
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  3977108 ggtggatttagtcccacatcggatagatagtactcttgagaagagtttata 3977058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 587
Target Start/End: Complemental strand, 4342383 - 4342317
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtt 587  Q
    |||||||| |||||||||| |||| ||||||||||||||||||||||| | ||||||||| ||||||    
T  4342383 gtgttagcggccaacactcagtgggatttagtcccacatcggatagatagaattcttgaggagagtt 4342317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 10861959 - 10861889
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||| | ||||||||||||| || ||||| || ||||||||||||||||||||||    
T  10861959 gtgttagcggccaacactcgaggggatttagtcccatattggatatataggattcttgagaagagtttata 10861889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 10862285 - 10862355
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||| | |||||||||||||||||||||||||  |||| || |||||||||||||    
T  10862285 gtgttagcggccaacactcgaggggatttagtcccacatcggatagataagattttttagaagagtttata 10862355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 30166184 - 30166134
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  30166184 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 30166134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 43169241 - 43169291
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  43169241 ggtggatttagtcccacatcggatagatagtactcttgagaagagtttata 43169291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 590
Target Start/End: Complemental strand, 30667939 - 30667879
Alignment:
Q  530 agccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    |||||||||||||| |||||||| |||| |||||||||| |||||||| | ||||||||||    
T  30667939 agccaacactcggtagatttagttccacctcggatagataggattcttcataagagtttat 30667879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 936814 - 936861
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  936814 ggatttagtctcacatcggatagataggaatcttgagaagagtttata 936861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 15962259 - 15962212
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  15962259 ggatttagtcccacatcggatagataggaatcttgagaatagtttata 15962212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 520 - 582
Target Start/End: Original strand, 32196887 - 32196950
Alignment:
Q  520 aggtgttagcagccaacactcggtgga-tttagtcccacatcggatagatgggattcttgagaa 582  Q
    |||||||||| | |||||||||||||| ||||||| |||||||||||||| | |||||||||||    
T  32196887 aggtgttagcggtcaacactcggtggaatttagtctcacatcggatagatagtattcttgagaa 32196950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 39420699 - 39420746
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  39420699 ggatttagtcccacatcggatagataggaattttgagaagagtttata 39420746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 6183471 - 6183421
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| ||||||||||||||||| | | ||||||||||||||||||    
T  6183471 ggtggatttaatcccacatcggatagatagtactcttgagaagagtttata 6183421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 11969051 - 11969101
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| |||||||||| | | ||||||||||||||||||    
T  11969051 ggtggatttagtcccacgtcggatagatagtactcttgagaagagtttata 11969101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 18901969 - 18901919
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||  || |||||| |||||||||||    
T  18901969 ggtggatttagtcccacatcggatagataagactcttgaaaagagtttata 18901919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21213990 - 21213940
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| |||||||| | | ||||||||||||||||||    
T  21213990 ggtggatttagtcccacattggatagatagtactcttgagaagagtttata 21213940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 589
Target Start/End: Complemental strand, 36161449 - 36161403
Alignment:
Q  544 ggatttagtcccacatcggat-agatgggattcttgagaagagttta 589  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||    
T  36161449 ggatttagtcccacatcggataagataggattcttgagaagagttta 36161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 541 - 586
Target Start/End: Complemental strand, 15820206 - 15820161
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagt 586  Q
    |||||||||||||||||||||||||||| | | |||||||||||||    
T  15820206 ggtggatttagtcccacatcggatagatagcactcttgagaagagt 15820161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 582
Target Start/End: Complemental strand, 17324145 - 17324085
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaa 582  Q
    |||||| |||||||||||| | ||||||||| ||||||| ||||||| |||||||||||||    
T  17324145 tgttaggagccaacactcgaggggatttagttccacatcagatagataggattcttgagaa 17324085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 25441697 - 25441745
Alignment:
Q  543 tggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  25441697 tggatttagtcccacatcagatagatagtactcttgagaagagtttata 25441745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 591
Target Start/End: Complemental strand, 43688524 - 43688476
Alignment:
Q  543 tggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| || |||||||||||||| ||| ||||||||||||||||||    
T  43688524 tggatttaatctcacatcggatagataggactcttgagaagagtttata 43688476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 582
Target Start/End: Complemental strand, 15961926 - 15961864
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaa 582  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||| |||||||||    
T  15961926 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgagaa 15961864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 44266410 - 44266363
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| |||||||  |||| ||||||||||||||||    
T  44266410 ggatttagtcccacatcagatagataagatttttgagaagagtttata 44266363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 7877843 - 7877893
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||| ||||||||||||| | | ||| ||||||||||||||    
T  7877843 ggtggatttagtcctacatcggatagatagcactctcgagaagagtttata 7877893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 591
Target Start/End: Original strand, 17325173 - 17325219
Alignment:
Q  545 gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||| |||||||| |||||| ||||||    
T  17325173 gatttagtcccacatctgatagataggattcttaagaagaatttata 17325219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 523 - 580
Target Start/End: Complemental strand, 17326155 - 17326097
Alignment:
Q  523 tgttagcagccaacactcggtg-gatttagtcccacatcggatagatgggattcttgag 580  Q
    ||||||| |||||||||  ||| |||||||||||||||| ||||||| |||||||||||    
T  17326155 tgttagcggccaacacttagtgagatttagtcccacatctgatagataggattcttgag 17326097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21214306 - 21214256
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  ||||||| | | ||||||||||||||||||    
T  21214306 ggtggatttagtcccacattagatagatagcactcttgagaagagtttata 21214256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 23054325 - 23054375
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| |||||||   | ||||||||||||||||||    
T  23054325 ggtggatttagtcccacatcagatagatataactcttgagaagagtttata 23054375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 591
Target Start/End: Original strand, 43195787 - 43195833
Alignment:
Q  545 gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||| | | ||||||||||||||||||    
T  43195787 gatttagtcccacatcagatagatagtactcttgagaagagtttata 43195833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 883697 - 883656
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  883697 agtcccacatcggatagataagactcttgagaagagtttata 883656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 884065 - 884106
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  884065 agtcccacatcggatagatgagactcttgagaagagtatata 884106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 3435582 - 3435541
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  3435582 agtcccacatcggatagataagactcttgagaagagtttata 3435541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 6986512 - 6986471
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  6986512 agtcccacatcggatagataagactcttgagaagagtttata 6986471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 12419846 - 12419887
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  12419846 agtcccacatcggatagataagactcttgagaagagtttata 12419887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 12431906 - 12431947
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  12431906 agtcccacatcggatagataagactcttgagaagagtttata 12431947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 12432113 - 12432154
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  12432113 agtcccacatcggatagataagaatcttgagaagagtttata 12432154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #50
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 17727412 - 17727453
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  17727412 agtcccacatcggatagataagactcttgagaagagtttata 17727453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 18585018 - 18585087
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  18585018 tgttagcagccaacactcggtgggatttagtcccacatcggatagataggattcttgagaagattttata 18585087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 45443200 - 45443269
Alignment:
Q  523 tgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  45443200 tgttagcggccaacactcggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 45443269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 51722231 - 51722302
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51722231 gtgttagcagccaacactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 51722302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 40642903 - 40642831
Alignment:
Q  523 tgttagcagccaacactc----ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  40642903 tgttagcagccaacactcaatgggtggatttagtcccacatcggatagataggattcttgagaagagtttata 40642831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 17294956 - 17295027
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17294956 gtgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttgagaagagtttata 17295027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 20208196 - 20208137
Alignment:
Q  532 ccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  20208196 ccaacactcggtggatttagtcccacatcggatagatatgattcttgaaaagagtttata 20208137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 20208495 - 20208436
Alignment:
Q  532 ccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  20208495 ccaacactcggtggatttagtcccacatcggatagatatgattcttgaaaagagtttata 20208436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 28509514 - 28509442
Alignment:
Q  523 tgttagcagccaacactcggtgg----atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||| ||||||||||||||||||    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  28509514 tgtttgcagccaacactcggtgggtggatttagtcccacatcggatagataggattcttgagaagagtttata 28509442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 29383747 - 29383678
Alignment:
Q  523 tgttagcagccaacactcgg-tggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||  ||| |||||||||||||||||    
T  29383747 tgttagcggccaacactcgggtggatttagtcccacatcggatagataagatacttgagaagagtttata 29383678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 519 - 591
Target Start/End: Complemental strand, 40521621 - 40521548
Alignment:
Q  519 aaggtgttagcagccaacactcggtg-gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| |||||||||||  | ||||||||||||||||||||||||  |||||||||||||||||||||    
T  40521621 aaggtgttagcggccaacactcgaggtgatttagtcccacatcggatagataagattcttgagaagagtttata 40521548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 45858635 - 45858704
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  45858635 tgttagcggccaacactcatggggatttagtcccacatcggatagataggattcttgagaagagtttata 45858704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 2697436 - 2697386
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  2697436 ggtggatttagtcccacatcggatagataggactcttgagaagagtttata 2697386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 4022230 - 4022180
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4022230 ggtggatttagtcccacatcggatagataggactcttgagaagagtttata 4022180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 19937148 - 19937098
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  19937148 ggtggatttagtcccacatcggatagatagaattcttgagaagagtttata 19937098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 591
Target Start/End: Original strand, 12287836 - 12287897
Alignment:
Q  531 gccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||    
T  12287836 gccaacactcggtgggatttagtcccacatcggatagataggattcttgaaaagaggttata 12287897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 524 - 591
Target Start/End: Complemental strand, 27958170 - 27958102
Alignment:
Q  524 gttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| || |||||||||| |||  ||||||| ||||||||||||||||||||||    
T  27958170 gttagcagccaacactcggagggatttagtcccgcattagatagataggattcttgagaagagtttata 27958102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 29228653 - 29228724
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  29228653 gtgttagcggccaactctcgggtgggatttagtcccacatcggatagataggaatcttgagaagagtttata 29228724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 4187384 - 4187337
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4187384 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 4187337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 4187615 - 4187568
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  4187615 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 4187568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 8520198 - 8520148
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  8520198 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 8520148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 17419786 - 17419836
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  17419786 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 17419836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 522 - 578
Target Start/End: Original strand, 17294845 - 17294903
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttg 578  Q
    |||||||| ||||||||||||   ||||||||||||||||||||||||| |||||||||    
T  17294845 gtgttagcggccaacactcgggtgggatttagtcccacatcggatagataggattcttg 17294903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 27957911 - 27957864
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||||||    
T  27957911 ggatttagtcccgcatctgatagatgggattcttgagaaaagtttata 27957864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 29228450 - 29228497
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||||||||||||| ||| ||||||||||||||||||    
T  29228450 ggatttagacccacatcggatagataggaatcttgagaagagtttata 29228497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 30604562 - 30604515
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||| ||||||||    
T  30604562 ggatttagtcccacatcggatagataggaatcttgagaatagtttata 30604515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 31411662 - 31411615
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  31411662 ggatttagtcccacatcagatagataggattcttgaaaagagtttata 31411615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 33562252 - 33562182
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||   || |||||||||||||||||||||| |||||||||| ||||| |||||    
T  33562252 tgttagcggccaacactcgggtgggttttagtcccacatcggatagataggattcttgaaaagaggttata 33562182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 38474285 - 38474332
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||| ||||||||||||| |||||||||| |||||||||||    
T  38474285 ggatttagtcctacatcggatagataggattcttgacaagagtttata 38474332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 31305710 - 31305760
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  31305710 ggtggatttagtcccacatccgatagatagcactcttgagaagagtttata 31305760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 522 - 579
Target Start/End: Original strand, 45858858 - 45858916
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttga 579  Q
    |||||||| ||||||||||| | |||||||||| |||||||||||||| ||||||||||    
T  45858858 gtgttagcggccaacactcgaggggatttagtctcacatcggatagataggattcttga 45858916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 33879883 - 33879833
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| |||| || | | ||||||||||||||||||    
T  33879883 ggtggatttagtcccacatcagatatatagcactcttgagaagagtttata 33879833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 33964372 - 33964422
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| |||| || | | ||||||||||||||||||    
T  33964372 ggtggatttagtcccacatcagatatatagcactcttgagaagagtttata 33964422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 40664209 - 40664259
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||| |||||||| ||||| ||| |||||| |||||||||||    
T  40664209 ggtggatttagtctcacatcggttagataggactcttgataagagtttata 40664259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 43423278 - 43423328
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| |||||||||||||||||   | ||||||||||||||||||    
T  43423278 ggtggatttattcccacatcggatagataacactcttgagaagagtttata 43423328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 45264662 - 45264712
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| ||| |||||| ||| |||||| |||||||||||    
T  45264662 ggtggatttagtcccacgtcgaatagataggactcttgataagagtttata 45264712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 39649180 - 39649139
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  39649180 agtcccacatcggatagataagactcttgagaagagtttata 39649139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 23591509 - 23591578
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||||  |||||||||||| ||||||||    
T  23591509 gtgttagcagccaacactcggtggatttaatcccacatcagatagataagattcttgagaaaagtttata 23591578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 26842699 - 26842769
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||| || |||||||||||||||||||    
T  26842699 tgttagcagccaacactcgggtgggatttagtcccacatcggatagataggtttcttgagaagagtttata 26842769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 26339968 - 26339897
Alignment:
Q  521 ggtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||| | |||||||||||||||||||||||||  || ||||||||||||||||||    
T  26339968 ggtgttaacagccaacactcgaggggatttagtcccacatcggatagataagaatcttgagaagagtttata 26339897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 33396309 - 33396356
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  33396309 ggatttagtcccacatcggatagataggattcttgagaagagtttata 33396356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 27577905 - 27577839
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||   ||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  27577905 tgttagcagccaacaca--gtggatttagtcccacaacggatagataagattcttgagaagagtttata 27577839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 27582192 - 27582124
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||| || | ||||||||||||||||| |||||||||   ||||||||||||||||||||    
T  27582192 tgttagcagccaaaacacagtggatttagtcccacaacggatagataaaattcttgagaagagtttata 27582124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 25183982 - 25184052
Alignment:
Q  523 tgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||   |||||||||||| ||||||||||||  ||||||||| |||||||||||    
T  25183982 tgttagcagccaacactcgggtgggatttagtcccgcatcggatagataagattcttgataagagtttata 25184052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 532 - 591
Target Start/End: Complemental strand, 27443651 - 27443592
Alignment:
Q  532 ccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||  ||||| ||||||| ||||||| ||||||||||||||||||||||    
T  27443651 ccaacactcggtgggattagtaccacatcagatagataggattcttgagaagagtttata 27443592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 8144016 - 8144066
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  8144016 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 8144066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21067162 - 21067112
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  21067162 ggtggatttagtcccatatcggatagatagcattcttgagaagagtttata 21067112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21088953 - 21088903
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||||||| | ||||||||||||||||||||    
T  21088953 ggtggatttagtcccatatcggatagatagcattcttgagaagagtttata 21088903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 24055214 - 24055164
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  24055214 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 24055164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 27311307 - 27311239
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| |||||||| | ||| |||||||| |||| |||||||||  |||||||||||||||||||||    
T  27311307 tgttagcggccaacacacagtgaatttagtcgcacaacggatagataagattcttgagaagagtttata 27311239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 33396504 - 33396574
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||   ||||||||||| ||||||||||||| ||||| ||||||||||||||||    
T  33396504 gtgttagcggccaacactcgggtgggatttagtcc-acatcggatagataggatttttgagaagagtttata 33396574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 25184212 - 25184259
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||| |||||||||||| |||||||||| |||||||||||    
T  25184212 ggatttagtcccgcatcggatagataggattcttgataagagtttata 25184259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 12134588 - 12134538
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||| ||||||||||||||||||||| | | ||||||||||||||||||    
T  12134588 ggtggacttagtcccacatcggatagatagcactcttgagaagagtttata 12134538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 19753709 - 19753659
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| | |||||| ||| ||||||||||||||||||    
T  19753709 ggtggatttagtcccacatggtatagataggactcttgagaagagtttata 19753659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 21043886 - 21043836
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||| ||||||||||| | | ||||||||||||||||||    
T  21043886 ggtggatttagtcccatatcggatagatagcactcttgagaagagtttata 21043836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 523 - 591
Target Start/End: Original strand, 13673835 - 13673904
Alignment:
Q  523 tgttagcagccaacactcggtgga-tttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| |||||||||| ||||| |||| || |||||| ||||||| || |||||||||||||||||||    
T  13673835 tgttagcggccaacactcagtggaatttaatctcacatcagatagataggtttcttgagaagagtttata 13673904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 541 - 580
Target Start/End: Original strand, 1409010 - 1409049
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgag 580  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  1409010 ggtggatttagtcccacatcggatagataggactcttgag 1409049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 591
Target Start/End: Complemental strand, 5613473 - 5613406
Alignment:
Q  524 gttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||||| |||||||||| || |||||| ||||||   |||||||| |||||||||||    
T  5613473 gttagcagacaacactcagtggatttagacctacatcgaatagatataattcttgataagagtttata 5613406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 590
Target Start/End: Complemental strand, 27313433 - 27313366
Alignment:
Q  523 tgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    ||||||||| |||||| |  |||||||| ||||||| |||||||||  |||||||||||||| |||||    
T  27313433 tgttagcagacaacacacaatggatttactcccacaacggatagataagattcttgagaagaatttat 27313366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 31978 - 31928
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||| |||||||||||||  || |||||| |||||||||||    
T  31978 ggtggatttagtccaacatcggatagataagactcttgataagagtttata 31928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 10418443 - 10418393
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||  ||||||||||    
T  10418443 ggtggatttagtcccacatcggatagatagcactcttgatgagagtttata 10418393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 549 - 591
Target Start/End: Original strand, 16194027 - 16194069
Alignment:
Q  549 tagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||| || |||||||| |||||||||||||    
T  16194027 tagtcccacatcggatatataggattctttagaagagtttata 16194069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 17096799 - 17096753
Alignment:
Q  545 gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||| ||||||| |||||| ||| ||||||||||||||||||    
T  17096799 gatttagtctcacatcgaatagataggagtcttgagaagagtttata 17096753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 19054492 - 19054542
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||| |||||||||||||||||||||   | ||||||||||||||||||    
T  19054492 ggtggaattagtcccacatcggatagataacactcttgagaagagtttata 19054542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 30539234 - 30539284
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||| |||||||||||||||||||||||  || |||||| |||||||||||    
T  30539234 ggtgaatttagtcccacatcggatagataagactcttgataagagtttata 30539284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 14769956 - 14769887
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  14769956 tgttagcggccaacactcgagtggatttagtctcacatcggatagataggattcttgagaagagtttata 14769887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 528 - 591
Target Start/End: Complemental strand, 39668535 - 39668472
Alignment:
Q  528 gcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||| |||||||||||||||||||||||||||  |||||||||||||| ||||||    
T  39668535 gcagccaacactcagtggatttagtcccacatcggatagatatgattcttgagaagaatttata 39668472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 22196678 - 22196608
Alignment:
Q  522 gtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||||  || ||||||||||||||||||    
T  22196678 gtgttagcggccaacactcggtgggatttagtcccacatcggatagatatgactcttgagaagagtttata 22196608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 523 - 591
Target Start/End: Complemental strand, 2471817 - 2471748
Alignment:
Q  523 tgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||| || || ||||||||||||||||    
T  2471817 tgttagcagccaacactcgaggggatttagtcccacatcggatagatagggtttttgagaagagtttata 2471748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 33040263 - 33040331
Alignment:
Q  522 gtgttagcagccaacactcg-gtgg-atttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    |||||||| ||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  33040263 gtgttagcggccaacactcgcgtgggatttagtcccacatcggatagataggattcttgagaagagttt 33040331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 873801 - 873750
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttatag 592  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  873801 ggtggatttagtcccacatcggatagataggactcttgagaagagtttatag 873750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 525 - 591
Target Start/End: Complemental strand, 22196448 - 22196381
Alignment:
Q  525 ttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||| | | ||||||||||||||||||    
T  22196448 ttagcggccaacactcggtgggatttagtcccacatcggatagatagtactcttgagaagagtttata 22196381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 544 - 591
Target Start/End: Original strand, 30329838 - 30329885
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30329838 ggatttagtcccacatcggatagataggattcttgagaagagtttata 30329885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 19439839 - 19439909
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  19439839 gtgttagcggccaacactcgaggggatttagtcccacatcagatagataggattcttgagaagaatttata 19439909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 590
Target Start/End: Original strand, 33040448 - 33040518
Alignment:
Q  522 gtgttagcagccaacactcg-gtgg-atttagtcccacatcggatagatgggattcttgagaagagtttat 590  Q
    |||||||| ||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||||||||||    
T  33040448 gtgttagcggccaacactcgcgtgggatttagtcccacatcagatagataggattcttgagaagagtttat 33040518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 521 - 591
Target Start/End: Complemental strand, 83937 - 83865
Alignment:
Q  521 ggtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||| || ||||||||||||| ||||||||    
T  83937 ggtgttagcggccaacactcgggtgggatttagtcccacatcggatatataggattcttgagaaaagtttata 83865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 542 - 591
Target Start/End: Original strand, 38131764 - 38131813
Alignment:
Q  542 gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  38131764 gtggatttagtcccacatcggatagataggactcttgagaagagtttata 38131813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 84136 - 84089
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||    
T  84136 ggatttagtcccacatcggatatataggattcttgagaagagtttata 84089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 521 - 583
Target Start/End: Original strand, 18541928 - 18541991
Alignment:
Q  521 ggtgttagcagccaacactcggtgg-atttagtcccacatcggatagatgggattcttgagaag 583  Q
    ||||||||| ||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  18541928 ggtgttagcggccaacacttggtgggatttagtctcacatcggatagataggattcttgagaag 18541991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 588
Target Start/End: Original strand, 27760074 - 27760121
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  27760074 ggtggatttagtcccacatcggatagataggactcttgagaagagttt 27760121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 32395416 - 32395369
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||||    
T  32395416 ggatttagtcccacatcggatagataggaatcttgagaagagtttata 32395369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 1028198 - 1028148
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  1028198 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 1028148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 9850448 - 9850522
Alignment:
Q  522 gtgttagcagccaacactcgg-----tggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||     |||||||| |||||||| |||||||| |||||||||| |||||||||||    
T  9850448 gtgttagcagccaacactcgggtgggtggatttattcccacattggatagataggattcttgataagagtttata 9850522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 522 - 588
Target Start/End: Original strand, 17584340 - 17584405
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagttt 588  Q
    ||||||||||||||||||  ||||||||||| |||||| ||||||||  ||||||||||||||||||    
T  17584340 gtgttagcagccaacactaagtggatttagt-ccacattggatagatatgattcttgagaagagttt 17584405  T

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Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 541 - 591
Target Start/End: Complemental strand, 37995739 - 37995689
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||||||||| | | ||||||||||||||||||    
T  37995739 ggtggatttagtcccacatcggatagatagcactcttgagaagagtttata 37995689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 18541702 - 18541771
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||||| |||||||||  | |||||||||||  |||||||||||| ||||||||    
T  18541702 gtgttagcggccaacactcggtagatttagtctaagatcggatagataagattcttgagaatagtttata 18541771  T

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Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 13843696 - 13843746
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  13843696 ggtggatttagtcccacatcagatagatagtactcttgagaagagtttata 13843746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 13844012 - 13844062
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  13844012 ggtggatttagtcccacatctgatagatagtactcttgagaagagtttata 13844062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 24792367 - 24792321
Alignment:
Q  545 gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  24792367 gatttagtcccatatcggatagataggaatcttgagaagagtttata 24792321  T

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Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 591
Target Start/End: Complemental strand, 28009901 - 28009852
Alignment:
Q  542 gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| ||||||| | | ||||||||||||||||||    
T  28009901 gtggatttagtcccacatcagatagatagaactcttgagaagagtttata 28009852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 522 - 591
Target Start/End: Complemental strand, 29396469 - 29396398
Alignment:
Q  522 gtgttagcagccaacactcggt--ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| |||||| |||||   ||||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  29396469 gtgttagcggccaactctcgggtgggatttagtcccacatcagatagataggaatcttgagaaaagtttata 29396398  T

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Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 5095998 - 5095951
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||| ||||||||||||||||| ||||| || |||||||||||||    
T  5095998 ggatttactcccacatcggatagataggattttttagaagagtttata 5095951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 29432411 - 29432461
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||| || ||||| ||| |||||| |||||||||||    
T  29432411 ggtggatttagtcccacattggttagataggactcttgataagagtttata 29432461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 541 - 591
Target Start/End: Original strand, 30588056 - 30588106
Alignment:
Q  541 ggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||||| ||||| | | |||||| |||||||||||    
T  30588056 ggtggatttagtcccacatcggttagatagaactcttgataagagtttata 30588106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 395375 - 395416
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||| |||||||| |||||||||| |||||||||||    
T  395375 agtcccacattggatagataggattcttgataagagtttata 395416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 591
Target Start/End: Complemental strand, 30870977 - 30870940
Alignment:
Q  554 ccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||  |||||||||||||||||||||    
T  30870977 ccacatcggatagataagattcttgagaagagtttata 30870940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 35527084 - 35527043
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  35527084 agtcccacatcggatagataagactcttgagaagagtttata 35527043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 38376739 - 38376780
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  38376739 agtcccacatcggatagataagactcttgagaagagtttata 38376780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Complemental strand, 43490352 - 43490311
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  43490352 agtcccacatcggatagataagactcttgagaagagtttata 43490311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 522 - 591
Target Start/End: Original strand, 165763 - 165833
Alignment:
Q  522 gtgttagcagccaacactcg-gtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||| ||||||||||| | ||||||||||| ||||||||||||| | ||||||||||||||||||||    
T  165763 gtgttagcggccaacactcgaggggatttagtcctacatcggatagatagaattcttgagaagagtttata 165833  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 532 - 591
Target Start/End: Original strand, 43710 - 43769
Alignment:
Q  532 ccaacactcggtggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||  ||||| ||||||| ||||||| ||||||||||||||||||||||    
T  43710 ccaacactcggtgggattagtaccacatcagatagataggattcttgagaagagtttata 43769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0785 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0785
Description:

Target: scaffold0785; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 544 - 591
Target Start/End: Complemental strand, 3222 - 3175
Alignment:
Q  544 ggatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    ||||||||||||||||||||||||| | ||| ||||||||||||||||    
T  3222 ggatttagtcccacatcggatagatagaatttttgagaagagtttata 3175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 545 - 591
Target Start/End: Complemental strand, 34750 - 34704
Alignment:
Q  545 gatttagtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||| ||||||||||| ||| ||||||||||||||||||    
T  34750 gatttagtcccatatcggatagataggaatcttgagaagagtttata 34704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 553
Target Start/End: Original strand, 18290 - 18321
Alignment:
Q  522 gtgttagcagccaacactcggtggatttagtc 553  Q
    ||||||||||||||||||||||||||||||||    
T  18290 gtgttagcagccaacactcggtggatttagtc 18321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 550 - 591
Target Start/End: Original strand, 76860 - 76901
Alignment:
Q  550 agtcccacatcggatagatgggattcttgagaagagtttata 591  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  76860 agtcccacatcggatagataagactcttgagaagagtttata 76901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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