View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-5 (Length: 700)
Name: NF3288-Insertion-5
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-5 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 7 - 282
Target Start/End: Complemental strand, 41296816 - 41296543
Alignment:
| Q |
7 |
attcaagtggttaatatgttaatcatttttgtgagactagttaagacnnnnnnntgaaattaagaaatgaacgaacgaagaaataccaagaacagcaaca |
106 |
Q |
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| T |
41296816 |
attcaagtggttaatatgttaatcatttttctgagactagttaagacaaaaa--tgaaattaagaaatgaacgaacgaagaaataccaagaacagcaaca |
41296719 |
T |
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| Q |
107 |
gccaaacgaagtgtctctgacatgttaaatatgttgtttggtctctacttagaagaagagatgtaatgtaatatttttgttttgagagaagagcattaag |
206 |
Q |
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| T |
41296718 |
gccaaacgaagtgtctctgacatgttaaatttgttgtttagtctctacttagaagaagagatgtaatgtaatatttttgttttgagagaagagcattaag |
41296619 |
T |
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| Q |
207 |
gacatgctctatttatagttgttacttaggacgcgtatgtaacatggtagtgtccagcttgaaacaaaaccgtacg |
282 |
Q |
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| T |
41296618 |
gacatgctctatttatagttgttacttaggacgcgtatgtaacatggtagtgtccagcttgaaacaaaaccgtacg |
41296543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 351 - 538
Target Start/End: Complemental strand, 41296476 - 41296289
Alignment:
| Q |
351 |
tggtttgtacataagtaataatcacgtggacgcaatatttggttcaacttgagaagctttccatcaacttgagaattccagccnnnnnnnctccctagtt |
450 |
Q |
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| T |
41296476 |
tggtttgtacataagtaataatcacgtggacgcaatatttggttcaacttgagaagctttccatcaacttgagaattccagcctttttttctccctagtt |
41296377 |
T |
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| Q |
451 |
tttagaggcttattgttattatttcccatcaattttgctagctattattcacaaatttcttgcgtgtcacttcatttttcacgtaatc |
538 |
Q |
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| T |
41296376 |
tttagaggcttattgttattatttcccataaattttgctagctattattcacaaatttcttgcgtgtcacttgatttttcacgtaatc |
41296289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 601 - 700
Target Start/End: Complemental strand, 41296219 - 41296126
Alignment:
| Q |
601 |
aaatcaactgattttgctgttggtaaagcattataaaggtaccaataacgcatattgaacacattattaagatgatttgttcttgatgacgtggctccca |
700 |
Q |
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| T |
41296219 |
aaatcaactgattttgctgttggtaaagcattataaaggtaccaat------tattgaacacattattaagatgatttgttcttgatgacgtggctccca |
41296126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 75 - 273
Target Start/End: Complemental strand, 41306511 - 41306308
Alignment:
| Q |
75 |
gaacgaacgaagaaataccaagaacagcaacagccaaacgaagtgtctctgacatgttaaatatgttgtttggtctctacttagaagaagagatgtaatg |
174 |
Q |
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| T |
41306511 |
gaacaaacgaaataataccaagaacagcaacagccagacgaagtgtatttgacatctttaatttgttttttactctctacttagaagaagaaatg----a |
41306416 |
T |
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| Q |
175 |
taatatttttgttttg------agagaagagcattaaggacatgctctatttatagttgttacttaggacgcgtat----gtaacatggtagtgtccagc |
264 |
Q |
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| T |
41306415 |
taata-ttttgtattgtaccacgaagaagaacattgaggacatgctctatttatagtcgttatgtaggacgcgtatttaattaacatagtagtgtccagc |
41306317 |
T |
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| Q |
265 |
ttgaaacaa |
273 |
Q |
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| T |
41306316 |
ttgaaacaa |
41306308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 41306232 - 41306193
Alignment:
| Q |
366 |
taataatcacgtggacgcaatatttggttcaacttgagaag |
406 |
Q |
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| T |
41306232 |
taataatcacgtggacacaa-atttggttcaacttgagaag |
41306193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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