View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-6 (Length: 671)
Name: NF3288-Insertion-6
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 8 - 669
Target Start/End: Original strand, 2340653 - 2341312
Alignment:
| Q |
8 |
tgtttaatatgagttaggattctctctatttaaaattgataaatgaatttttcgagggtgaacccttagcatttctaataataaatgaattttgtcgtag |
107 |
Q |
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| T |
2340653 |
tgtttaatatgagttaggattctctctatttcaaattgataaatgaatttttcgagggtgaacccttagcatttctaataataaatgaattttgtcgtaa |
2340752 |
T |
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| Q |
108 |
taaaaaatgaagttttattgtattattcctaattttcttgcttctcattttgacccttnnnnnnncaacataacttcaaatatctgcaactataattgtg |
207 |
Q |
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| T |
2340753 |
taaaaaatgaagttttattgtattattcgtaattttcttgcttctcattttgacccttaaaaaaacaacataacttcaaatatctgcaactataattgtg |
2340852 |
T |
|
| Q |
208 |
atcaatatataaatattttagaggtctctacaatgccattgtaagtttgtaactgcaattgtctccacattagtcacattcttctgtattttgca-caat |
306 |
Q |
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| T |
2340853 |
atcaatatataaatattttagaggtctctataatgccattgtaagtttgtaactgcaattgtctccacattagtcacattcttctgtatttttccgcaat |
2340952 |
T |
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| Q |
307 |
attaaggtttgcagcgtaactcttatcgcaattttgaaccaattgatcaatgatatcgaaaatcattagtattaaggccaatgaaaatgatgcatctatg |
406 |
Q |
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| T |
2340953 |
aataaggtttgcagcataactctaatcgcaattttgaaccatttgatcaatgatatccaaaat---taataataaggccaatgaaaatgatgcatctatg |
2341049 |
T |
|
| Q |
407 |
tccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttgatgtgaattgaagaagttgggg |
506 |
Q |
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| T |
2341050 |
cccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttgatgtgaattgaagaagttgggg |
2341149 |
T |
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| Q |
507 |
tatgttgtttggatttaatgaagttggtagaaggctaattaggtttctaccattctgtgaagaaatagaactgttcaaagcttgtgttcttgaaagatct |
606 |
Q |
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| T |
2341150 |
tatgttgtttggatttaatgaagttggtagaaggctaattaggtttctaccattctgtgaagaaacagaactgttcaaagcttgtgttcttgagagatct |
2341249 |
T |
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| Q |
607 |
aaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttctttcattagg |
669 |
Q |
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| T |
2341250 |
aaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttctttcattagg |
2341312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 590 - 662
Target Start/End: Original strand, 3351957 - 3352029
Alignment:
| Q |
590 |
gtgttcttgaaagatctaaattaatgtttaagctattatcacttccattgctccaagaaccctcagtttcttt |
662 |
Q |
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| T |
3351957 |
gtgttctagaaaggtctagattcatatctgagctgttatcacttccattgctccaagaaccttcattttcttt |
3352029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 485
Target Start/End: Original strand, 3351830 - 3351909
Alignment:
| Q |
406 |
gtccaaggccagaggttctgatgctcatcaatgttgtgaaacatgctgctgaagttttcatcttgaatatctggtcttga |
485 |
Q |
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| T |
3351830 |
gtccaaggccataaactctgctgctcatcaatgttgttaaacatgttgcaaaagctttcatcttgaagatctgatcttga |
3351909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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