View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3288-Insertion-7 (Length: 608)
Name: NF3288-Insertion-7
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 8 - 606
Target Start/End: Original strand, 36650362 - 36650960
Alignment:
| Q |
8 |
ctgcggcctcaaatggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaaca |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650362 |
ctgcggcctcaaacggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaaca |
36650461 |
T |
|
| Q |
108 |
cccctgaatcctttccattcgtacagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcgaaaaaggggtcagttc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
36650462 |
cccctgaatcctttccattcgtgcagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcaaaaaaggggtcagttc |
36650561 |
T |
|
| Q |
208 |
tcacacttccactaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctatccgagctgaagatcagc |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
36650562 |
tcacacttccactaggcactccaagaataccaaacgcagccagatgctcaacaacattaaacacgctcatcaacatcatctgtccaagctgaagatcagc |
36650661 |
T |
|
| Q |
308 |
aaccaaggatttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36650662 |
aaccaaggatttgctactagcatggtaaccgcaatgcttaccaacaattcttggtgtggagggtaaatttaacaagccctccataccaagggtgatcgag |
36650761 |
T |
|
| Q |
408 |
taactcggtgtaaaatccataatgaatctattttctccagtgagctcgttcatctcacataaaaaataaggcacgcccctcattgcagccacaacctctg |
507 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
36650762 |
taactcggtgtaaaatccataatgaaactattttctccagtgagctcgttcatctcacgcaaaaaataaggcacacccctcattgcagccacaaccttgg |
36650861 |
T |
|
| Q |
508 |
ccaaatcatcaacagcacccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctgcgagccaaccaaactgg |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
36650862 |
ccaaatcatcaacagcacccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctgcgagccgaccaaactgg |
36650960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 12 - 337
Target Start/End: Complemental strand, 36643204 - 36642879
Alignment:
| Q |
12 |
ggcctcaaatggctgtacaccccatctcgtatctcacctgccaaggcgacagctacattttttagattacccatcatagtaaggaaaaagggaacacccc |
111 |
Q |
| |
|
||||||||| ||||| | ||||| ||||||||||||||||||||||| ||| | |||||| | |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
36643204 |
ggcctcaaacggctgcataccccttctcgtatctcacctgccaaggcaacatcaacatttctcagattacccatcatagcaaggaaaaagggtacacccc |
36643105 |
T |
|
| Q |
112 |
tgaatcctttccattcgtacagaacagtattatcacgttcagcttcacaccttagcccatacttccttacattactgtcgaaaaaggggtcagttctcac |
211 |
Q |
| |
|
|||||||||||||| || ||||| | |||||| || || |||| | ||| ||||| | || |||| |||||||| |||| |||| |||||| |||| |
|
|
| T |
36643104 |
ggaatcctttccatttgtgcagaagactattattaccgtcttcttcgctcctgagcccccaattgcttaaattactgttgaaatagggatcagttttcac |
36643005 |
T |
|
| Q |
212 |
acttccactaggcactccaaaaataccaaacgcagccagatgctcaacaacattaaacatgctcatcaacatcatctatccgagctgaagatcagcaacc |
311 |
Q |
| |
|
| |||||||||| | || ||||| || || ||| |||||| ||| || |||||||||| ||||||||||||||||| | ||||||||||||| | |||| |
|
|
| T |
36643004 |
atttccactaggtaagccgaaaatgccgaaggcacccagattctcgacgacattaaacacgctcatcaacatcatctgtacgagctgaagatcggaaacc |
36642905 |
T |
|
| Q |
312 |
aaggatttgctactagcatggtaacc |
337 |
Q |
| |
|
||| |||||||| |||||| |||||| |
|
|
| T |
36642904 |
aagcatttgctagtagcatagtaacc |
36642879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 498 - 589
Target Start/End: Complemental strand, 36642579 - 36642488
Alignment:
| Q |
498 |
acaacctctgccaaatcatcaacagcacccattttgatggctatattaattatgttattccataacctttccgggttgccatacatgggctg |
589 |
Q |
| |
|
|||||||| | |||||| |||| || ||||||||||||||||||||| |||||||||||||| |||||||| ||| | |||||||| ||||| |
|
|
| T |
36642579 |
acaacctcggtcaaatcttcaataggacccattttgatggctatattgattatgttattccacaacctttcggggcttccatacataggctg |
36642488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University