View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288-Insertion-8 (Length: 600)
Name: NF3288-Insertion-8
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 76 - 524
Target Start/End: Original strand, 12652180 - 12652629
Alignment:
| Q |
76 |
tctatgatttcaatcggaggaagttggagacgaaattggaggtatgaaatgggtatgctgctttcatttgtactgtcctctgtactgcgtattttcacat |
175 |
Q |
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| T |
12652180 |
tctatgatttcaatcggaggaagttggagacaaaattggtggtattaaatgggtatgttgctttcatttgtactgtcctcaagactgcttattttcacat |
12652279 |
T |
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| Q |
176 |
atgggttttgggtgtcattggtgtaaaggaaccgtggactaaactcgttgttgttggaccgttacctgactgaatccgccctatcgc-ttgcgaatcaag |
274 |
Q |
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| T |
12652280 |
atcgattttgggtgaaattggtgttgaggaatcgtggactaaactctttgttgttggacctttacctgacattatccgccctatcgcggtaggaattaag |
12652379 |
T |
|
| Q |
275 |
actattcttttctacataaaagaagatacaaaggccgcatgttttgatttaagtacccaaaggattgaggaagttgggggtattgtggagcctcgaatgt |
374 |
Q |
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| T |
12652380 |
agtattcttttctacataaaagaagatacaaagttagcatgttttgatttaagtacccaaaggattgaggaagtttgtgttaatggagagccacgaaggt |
12652479 |
T |
|
| Q |
375 |
tgccaattataaattaccaggaaaaccttctttcctttggaggaatgaatattttattttttatgtagttcaataacttttaaatcaagagattgatgaa |
474 |
Q |
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| T |
12652480 |
tgcaaattataagttacaaggaaaaccttctttcttttggaggaatgaatgtttaattttttatgtagttcaataagtttttaatcaagagattgatgaa |
12652579 |
T |
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| Q |
475 |
cattgttattagatttatgattttgacggacaggaatgtgactaagttat |
524 |
Q |
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| T |
12652580 |
cattgttattagatttatgattttgacgaagaggaatgttattaagttat |
12652629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 12647009 - 12647416
Alignment:
| Q |
19 |
caaacttatcttcatttgactttagaattcagacctccttggagggagtatcctctatctatgatttcaatcggaggaagttggagacgaaattggaggt |
118 |
Q |
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| T |
12647009 |
caaacttaccttcatttgactttagcaaagagacatccttagagggagtatcatctatctatgatttcaatcgcagaaagttggagaaaaaattggtggt |
12647108 |
T |
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| Q |
119 |
atgaaatgggtatgctgctttcatttgtactgtcctctgtactgcgtattttcacatatgggttttgggtgtcattggtgtaaaggaaccgtggactaaa |
218 |
Q |
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| T |
12647109 |
attaaatgggtctgttgctttcatttgtactgtcctcatgacttcttttagtcacatatgggttttgggtgaacatggtgttaaggaatcgtggactaaa |
12647208 |
T |
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| Q |
219 |
ctcgttgttgttggaccgttacctgactgaatccgccctatcgc-ttgcgaatcaagactattcttttctacataaaagaagatacaaaggccgcatgtt |
317 |
Q |
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| T |
12647209 |
ctttttgttgttggacctttacctgacattacccgtcctatcgcggtaggaataaagagtgttctgttctacataaaagaagatacggagttagcatgtt |
12647308 |
T |
|
| Q |
318 |
ttgatttaagtacccaaaggattgaggaagttgggggtattgtggagcctcgaatgttgccaattataaattaccaggaaaaccttctttcctttggagg |
417 |
Q |
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| T |
12647309 |
ttgatttaagtacccaaaggattgaggaaatttgggttaatgaagagccacaaaggttgcaaattataacttataagaaaaaccttctttctttcggagt |
12647408 |
T |
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| Q |
418 |
aatgaata |
425 |
Q |
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| T |
12647409 |
aatgaata |
12647416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 541 - 600
Target Start/End: Original strand, 12652716 - 12652775
Alignment:
| Q |
541 |
agtattggagaaataaacacatttgtaatttttctatgcttcaatccctatttatttgca |
600 |
Q |
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| T |
12652716 |
agtattggagaaataaacacatttgtaatttttctatgcttcaatctcttttgatttgca |
12652775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 541 - 593
Target Start/End: Original strand, 12647510 - 12647562
Alignment:
| Q |
541 |
agtattggagaaataaacacatttgtaatttttctatgcttcaatccctattt |
593 |
Q |
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| T |
12647510 |
agtatgggagaaataaactcatttgtaatttttctatgcttcaatctctattt |
12647562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 353
Target Start/End: Original strand, 12725053 - 12725088
Alignment:
| Q |
318 |
ttgatttaagtacccaaaggattgaggaagttgggg |
353 |
Q |
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| T |
12725053 |
ttgatttaagtacccaaaggattgaggaaattgggg |
12725088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 13024835 - 13024766
Alignment:
| Q |
166 |
attttcacatatgggttttgggtgtcattggtgtaaaggaaccgtggactaaactcgttgttgttggacc |
235 |
Q |
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| T |
13024835 |
attttcacatttgggttttgggtgaactcggtgtcaaagaatcgtggactaaattctttgttgttggacc |
13024766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 44912585 - 44912518
Alignment:
| Q |
168 |
tttcacatatgggttttgggtgtcattggtgtaaaggaaccgtggactaaactcgttgttgttggacc |
235 |
Q |
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| T |
44912585 |
tttcacatatcgattttgggtgaacttggtgtgaaggaatcgtgaactaaactctttgttgttggacc |
44912518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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