View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-10 (Length: 420)
Name: NF3288R-Insertion-10
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-10 |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 2601628 - 2602040
Alignment:
| Q |
8 |
accatccaacaaaatcatcttgtttaattccacataagctttaaaaaca--tctctcaatatcttccaccttcatctccaaataccaattcccttgagca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
2601628 |
accatccaacaaaatcatcttgtttaattccacataagctttaaaaacacatttctcaatatcttctaccttcatctccaaataccaattcctttgagca |
2601727 |
T |
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| Q |
106 |
ttttgtactttgataaattcatttccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttttatagttataaaataa |
205 |
Q |
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| T |
2601728 |
ttttgtactttgataaattcatctccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttacatagttataaaataa |
2601827 |
T |
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| Q |
206 |
ggtttagattttctaggtccagtgaactcaaagacaaattaaattcattctatg--atatatacttaagttcttcccttacaacaccgttgttgtatgtn |
303 |
Q |
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| T |
2601828 |
ggtttagattttccaggtccagtgaaatcaaagaca----aaattcattcaatgatatatatacttaagttcttcccttacaacaccgttgttgtatgta |
2601923 |
T |
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| Q |
304 |
nnnnnnnttacaagtacaaaccaagtataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaattttattgagcatctcaa |
403 |
Q |
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| T |
2601924 |
aaataaattacaagtacaagccaagtataactattatgatgtaatttgttttacctgcatataccttcctaacatctctgaattttattgagcatctcaa |
2602023 |
T |
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| Q |
404 |
aagtgaagaacaccctt |
420 |
Q |
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| T |
2602024 |
aagtgaagaacaccctt |
2602040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 2615173 - 2615572
Alignment:
| Q |
8 |
accatccaacaaaatcatcttgtttaattccacataagctttaaaaacatctctcaatatcttccaccttcatctccaaataccaattcccttgagcatt |
107 |
Q |
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| T |
2615173 |
accatccaacaaaatcatcttgtttaattccacataagctttaaaaacatctctcaatatcctccaccttcatctccgaataccaattcccttgagcatt |
2615272 |
T |
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| Q |
108 |
ttgtactttgataaattcatttccaaatcaattaccgtcctgcaaaaattttcatatataagcacatctatgacaaaacttttatagttataaaataagg |
207 |
Q |
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| T |
2615273 |
ttgtactttgataaattcatccccaaatcaattactgtcctgcaaaaattttcatatataagcacatttatgacaaaacttatatagttataaaataagg |
2615372 |
T |
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| Q |
208 |
tttagattttctaggtccagtgaactcaaagacaaattaaattcattctatgatatatacttaagttcttcccttacaacaccgttgttgtatgt-nnnn |
306 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2615373 |
tttaaattttctaggtccaatgaactcaaagaca----caattcattcaatgatatatacttaaattcttcccttacaacaccgttgttgtatgtaaaaa |
2615468 |
T |
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| Q |
307 |
nnnnttacaagtacaaaccaagtataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaattttattgagcatctcaaaag |
406 |
Q |
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| T |
2615469 |
aaaattacaagtacaaaccaagtataactattatgatgtaatttgttttacctgcatataccttccaaacatctctgaattttgttgagcatctcaaaag |
2615568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 420
Target Start/End: Complemental strand, 22194282 - 22193886
Alignment:
| Q |
8 |
accatccaacaaaatcatcttgtttaattccacataagctttaaaaacatctctcaatatcttccaccttcatctccaaataccaattcccttgagcatt |
107 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22194282 |
accatccaacaaaatcatcttgcttagttccacataagctttaaaaacatctctaaatatcttccacctttatctccaaataccaattcccttgagcatt |
22194183 |
T |
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| Q |
108 |
ttgtactttgataaattcatttccaaatcaattaccgtcctgcaaaaattt-tcatatataagcacatctatgacaaaacttttatagttataaaataag |
206 |
Q |
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|| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
22194182 |
ttctactttgataaattcatctccaaatcaattagtgtcctgcaaaaaaaaatcatatataagcacatctatgacaaaacatatattgttataaaataag |
22194083 |
T |
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| Q |
207 |
gtttagattttctaggtccagtgaactcaaagacaaattaaattcattctatgatatatacttaagttcttcccttacaacaccgttgttgtatgtnnnn |
306 |
Q |
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| T |
22194082 |
gtttagattttctaggtccattgaactcaaagaca----caattcattcaatgatatatacttaaattcttcccttacaacacc-------------aaa |
22194000 |
T |
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| Q |
307 |
nnnnttacaagtacaaaccaagtataactattaagatgtaatttgttttacctgcatataccttcctaacatctctgaattttattgagcatctcaaaag |
406 |
Q |
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||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22193999 |
ataattacaagtacaaaccaagtataattatttagatgtaattcgttttacctgcatataccttcctaacatctctgaattttgttgagcatctcaaaag |
22193900 |
T |
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