View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-12 (Length: 410)
Name: NF3288R-Insertion-12
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-12 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0662 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 410
Target Start/End: Complemental strand, 2731 - 2329
Alignment:
| Q |
8 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcacccttccaagggtataataatc |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| ||||||||||| |
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| T |
2731 |
agtgtccattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatc |
2632 |
T |
|
| Q |
108 |
catgagagaaaacaggtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
207 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
2532 |
T |
|
| Q |
208 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
307 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
2432 |
T |
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| Q |
308 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
2431 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaagg |
2332 |
T |
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| Q |
408 |
tac |
410 |
Q |
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||| |
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| T |
2331 |
tac |
2329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 369
Target Start/End: Original strand, 5365 - 5726
Alignment:
| Q |
8 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcacccttccaagggtataataatc |
107 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| ||||||||| ||||||||||| |
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| T |
5365 |
agtgtccattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatc |
5464 |
T |
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| Q |
108 |
catgagagaaaacaggtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
207 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
5564 |
T |
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| Q |
208 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
307 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5565 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
5664 |
T |
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| Q |
308 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5665 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
5726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 2051 - 2453
Alignment:
| Q |
8 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcacccttccaagggtataataatc |
107 |
Q |
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||||||||||| | |||||| |||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
2051 |
agtgtccattccttcttcaaagattcccatctgttctcaaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatc |
2150 |
T |
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| Q |
108 |
catgagagaaaacaggtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
207 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
2250 |
T |
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| Q |
208 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
307 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
2350 |
T |
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| Q |
308 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
2351 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttattctccactttttttatcaactctgcatcaccatcattcttcaagg |
2450 |
T |
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| Q |
408 |
tac |
410 |
Q |
| |
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||| |
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| T |
2451 |
tac |
2453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 410
Target Start/End: Original strand, 35172058 - 35172460
Alignment:
| Q |
8 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcacccttccaagggtataataatc |
107 |
Q |
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||||||||||| | |||||| |||| |||||||||||| |||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||||| |
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| T |
35172058 |
agtgtccattccttcttcaaagattcccatctgttctcgaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatc |
35172157 |
T |
|
| Q |
108 |
catgagagaaaacaggtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
207 |
Q |
| |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172158 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
35172257 |
T |
|
| Q |
208 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
307 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172258 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
35172357 |
T |
|
| Q |
308 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
35172358 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaagg |
35172457 |
T |
|
| Q |
408 |
tac |
410 |
Q |
| |
|
||| |
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|
| T |
35172458 |
tac |
35172460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 51186145 - 51186059
Alignment:
| Q |
73 |
tttgtgaacatcacccttccaagggtataataatccatgagagaaaacaggtctcatatcatcagcaaattcatcaggtgttgaata |
159 |
Q |
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||||||||| ||| ||||||||||||| | ||||||||||| || ||| |||||||| |||||||| ||||| || |||||||| |
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| T |
51186145 |
tttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
51186059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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