View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-14 (Length: 346)
Name: NF3288R-Insertion-14
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-14 |
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| [»] chr1 (6 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 9 - 346
Target Start/End: Complemental strand, 9828568 - 9828231
Alignment:
| Q |
9 |
aaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaactc |
108 |
Q |
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| T |
9828568 |
aaaattaagtgggaatcggaggttgatatgtgtgctgacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaactc |
9828469 |
T |
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| Q |
109 |
ctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcggaaaagttacaattatattaatg |
208 |
Q |
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| T |
9828468 |
ctgaggagcagacgaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcagaaaagttacaattatattaatg |
9828369 |
T |
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| Q |
209 |
cttgtgatgtcataagaatgttgcacttgtgttttcaagaatagccaaactttcattgtcctacttgtcagaaaacacgggaggatagagatgaagttga |
308 |
Q |
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| T |
9828368 |
cttgtgatgtcataagaatgttgcacttgtgttttcaagaatagccaaactttcattgtcctacttgtcggaaaacacgggaggataaagatgaagttga |
9828269 |
T |
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| Q |
309 |
gcaatcataaaagtttgttatttttcgcgaagttgcta |
346 |
Q |
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| T |
9828268 |
gcaatcatataagtttgttatttttcgtgaagttgcta |
9828231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 9813779 - 9813574
Alignment:
| Q |
9 |
aaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaactc |
108 |
Q |
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| T |
9813779 |
aaaattaagtgggaatcggaggttgaaatgcgtgcagacttcggaaaggatcctgtgttatgtatgaaggctgtatgtgttctttttcgacaccaaactt |
9813680 |
T |
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| Q |
109 |
ctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcggaaaagttacaattatattaatg |
208 |
Q |
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| T |
9813679 |
ccgaggagcagatgaactttgtaacattgagccccgaagggcgtggacttagctcttgtgatgctagcaggtatgcagaaaagttacatttagattaatg |
9813580 |
T |
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| Q |
209 |
cttgtg |
214 |
Q |
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| T |
9813579 |
cttgtg |
9813574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 9824252 - 9824076
Alignment:
| Q |
22 |
aatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaactcctgaggagcagac |
121 |
Q |
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| T |
9824252 |
aatcggaggttgagatgcatgcagacttcggaaaggatcctgtgtaatgtatgaaggctgtatgtgttctttttcgacagcaaacttctgaggagcagat |
9824153 |
T |
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| Q |
122 |
aaactttgtaacattgaaccgcaacgggcgtggatttagctcttttgatgctgacaggtatgcggaaaagttacaatta |
200 |
Q |
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| T |
9824152 |
gaactttgtaacattgagctgcaa--ggcgtcgatttagctcttttaatgctaacaggtttgcagaaaagttacaatta |
9824076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 234 - 346
Target Start/End: Complemental strand, 9813579 - 9813466
Alignment:
| Q |
234 |
cttgtgttttcaagaatagccaaactttcattgtcctacttgtcagaaaacacgggaggatagagatgaagttgagcaa-tcataaaagtttgttatttt |
332 |
Q |
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| T |
9813579 |
cttgtgtttttaagaatacgcaaactttcgatgtcctatttgtcggaaaacacgggaggataaagatgaagttgagcaattcatataagtttgttatttt |
9813480 |
T |
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| Q |
333 |
tcgcgaagttgcta |
346 |
Q |
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| T |
9813479 |
tcgagaagttgcta |
9813466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 254 - 346
Target Start/End: Complemental strand, 9824073 - 9823980
Alignment:
| Q |
254 |
caaactttcattgtcctacttgtcagaaaacacgggaggatagagatgaagttgagcaa-tcataaaagtttgttatttttcgcgaagttgcta |
346 |
Q |
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| T |
9824073 |
caaactttcgatgtcctatttgtcggaaaacacgggaggataaagatgaagttgagcaattcatataagtttgttatttttcaagaagttgcta |
9823980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 9803723 - 9803625
Alignment:
| Q |
9 |
aaaattaagtgggaatcggaggttgatatgtgtgcagacttcggaaaggatcaagtgttatgtatgaaggctgtatgtgttctttttcgacagcaaact |
107 |
Q |
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| T |
9803723 |
aaaattaagtgggaattggaggttgagatgcttgcataatttgggaaggatcctgtgttatgtatgaaggttgtttgcgctatttatcgacaacaaact |
9803625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 6985 - 6921
Alignment:
| Q |
92 |
ttttcgacagcaaactcctgaggagcagacaaactttgtaacattgaaccgcaacgggcgtggat |
156 |
Q |
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| T |
6985 |
ttttcgacagcaaacttgtgaggagcagatgaactttgtaactttgagccgcaacgggcgtggat |
6921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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