View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288R-Insertion-15 (Length: 256)

Name: NF3288R-Insertion-15
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288R-Insertion-15
NF3288R-Insertion-15
[»] chr1 (5 HSPs)
chr1 (131-256)||(14665378-14665503)
chr1 (40-119)||(14653014-14653093)
chr1 (40-119)||(14662805-14662884)
chr1 (9-50)||(14665337-14665378)
chr1 (59-104)||(14687940-14687985)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 131 - 256
Target Start/End: Original strand, 14665378 - 14665503
Alignment:
Q  131 aattggggttaacttgctgcttcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc 230  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14665378 aattggggttaacttgctgctgcgaacttctgcccagtgttgcagcagtcctttgacgccttactgtttgagagcacatgcagacacagtagcagatgtc 14665477  T
Q  231 tctacattataccaaatcttgttgtt 256  Q
    ||||||||||||||||||||||||||    
T  14665478 tctacattataccaaatcttgttgtt 14665503  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 14653014 - 14653093
Alignment:
Q  40 atatgtcaataccaacctggttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgtcctagatgaggtttt 119  Q
    |||||||| ||||||||| ||||||||||| | |  ||||||||| || |||||||||||||||||||||||||||||||    
T  14653014 atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt 14653093  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 119
Target Start/End: Original strand, 14662805 - 14662884
Alignment:
Q  40 atatgtcaataccaacctggttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgtcctagatgaggtttt 119  Q
    |||||||| ||||||||| ||||||||||| | |  ||||||||| || |||||||||||||||||||||||||||||||    
T  14662805 atatgtcagtaccaaccttgttgtgaagctccaataaggctgcatacacattgcatttgtagcgtcctagatgaggtttt 14662884  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 50
Target Start/End: Original strand, 14665337 - 14665378
Alignment:
Q  9 gaatccacattctcaagctgcaaaatcttttatatgtcaata 50  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14665337 gaatccacattctcaagctgcaaaatcttttatatgtcaata 14665378  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 14687985 - 14687940
Alignment:
Q  59 gttgtgaagcttcgaagaggctgcatccatattgcatttgtagcgt 104  Q
    ||||||||||| |||| ||||||||| || ||||||||||||||||    
T  14687985 gttgtgaagctccgaaaaggctgcattcacattgcatttgtagcgt 14687940  T

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