View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3288R-Insertion-3 (Length: 933)
Name: NF3288R-Insertion-3
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-3 |
 |  |
|
Alignment Details
Target: chr3 (Bit Score: 720; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 9 - 877
Target Start/End: Original strand, 55211303 - 55212163
Alignment:
| Q |
9 |
agtacaagatatgagagatacttttgttccattgattttttaaaaattacacttgtttgaatttagcaacccagatggtggaaaatataatcttttctcc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55211303 |
agtacaagatatgagagatacttttgttccattgatttgttaaaaattacacttgtttgaatttagcaacccagatggtggaaaatataatcttttctcc |
55211402 |
T |
 |
| Q |
109 |
agatggataaatttatacaaaacgattttcatcttctccatttgaatgacgaaattctgacgagatgttttttaagcaagtaatgctacaacaacccgat |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55211403 |
agatggataaatttatacaaaacgatattcatcttctccatttgaatgacgaaattctgacgagatgttttttaagcaagtaatgctacaacaacccgat |
55211502 |
T |
 |
| Q |
209 |
atccaaagattctatttatttccatgccaacaactttggactgccacattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatc |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55211503 |
atccaaagattctatttatttccatgccaac---tgtggactgccacattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatc |
55211599 |
T |
 |
| Q |
309 |
atggcaatatgttttattgttaggcgagaagtgttctcccactgccaaactaaacagtagcagaagatgcacaagaagtgttgctgatattgatactacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
55211600 |
atggcaatatgttttattgttaggcgagaagtgttctcccactgccaaaccaaacagtagcagaagatgcacaacaagtgttgctgatattgatactatc |
55211699 |
T |
 |
| Q |
409 |
caatttaagtagggatcacattccataaattagagaaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacata |
508 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
55211700 |
caatttaagtaggaagcacattccataaattagagaaaaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcata |
55211799 |
T |
 |
| Q |
509 |
caatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagat |
607 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
55211800 |
caa-----atatagacttgtgcatattcataataagataagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagat |
55211894 |
T |
 |
| Q |
608 |
taaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagttagcgcaagaaatccaaatttcca |
707 |
Q |
| |
|
|||| ||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| || |
|
|
| T |
55211895 |
taagatgagtcgtgataacttttagaactagccgagtcgccacattagtgctccttattctaaatatcctatcagtt-gcgcaagaaatccaaatttaca |
55211993 |
T |
 |
| Q |
708 |
tggcatcaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactgctctgacttcgtcgaatgattcatgtgtttgaa |
807 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
55211994 |
tggcaacaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactactctgacttcgtcgaatgattcatctgtttgaa |
55212093 |
T |
 |
| Q |
808 |
cttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtgcacaggttctg |
877 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
55212094 |
cttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtacagaggttctg |
55212163 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 468 - 681
Target Start/End: Complemental strand, 30912135 - 30911921
Alignment:
| Q |
468 |
aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca |
566 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
|
|
| T |
30912135 |
aaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcaccctaacatactca |
30912036 |
T |
 |
| Q |
567 |
atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttatt |
666 |
Q |
| |
|
|||||||| |||| ||| ||| || |||||||||||||||||||||||| | ||||||| |||||||||| ||||| |||||||| || ||||| |
|
|
| T |
30912035 |
atattatcccctaacaagatatattttagatccttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattatt |
30911936 |
T |
 |
| Q |
667 |
ctaaatatcccatca |
681 |
Q |
| |
|
|||| ||||| |||| |
|
|
| T |
30911935 |
ctaagtatcctatca |
30911921 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 399 - 591
Target Start/End: Complemental strand, 36326640 - 36326448
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
36326640 |
tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca |
36326542 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatatacctt |
591 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||| |||| ||| ||||||| |
|
|
| T |
36326541 |
taataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagatacctt |
36326448 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 32414816 - 32414655
Alignment:
| Q |
472 |
tcattatatttttcattgattctcataataagacatacaatatttatatagac----ttgtgcatactcataataagat-agtgcaccctaacatactca |
566 |
Q |
| |
|
||||||||||||| |||||||||| ||||||| |||||||| ||||||||||| ||||||| ||||| |||||||| |||||||| ||||||||| | |
|
|
| T |
32414816 |
tcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacatactta |
32414717 |
T |
 |
| Q |
567 |
atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataactt |
628 |
Q |
| |
|
|||||||| || ||||||||||| ||||||| ||| |||||||||||| | ||||||| |
|
|
| T |
32414716 |
atattatccccagacaatataccttctagatccttataggttaaggtgagtcataataactt |
32414655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 407 - 547
Target Start/End: Complemental strand, 14029469 - 14029319
Alignment:
| Q |
407 |
cccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca-----taa |
499 |
Q |
| |
|
||||||| ||||||||||||| |||| || |||||| | ||||||||||||| ||| || ||||||||||||||||||||||||||| | ||| |
|
|
| T |
14029469 |
cccaattcgagtagggatcacactccagaatttagagtgagaaactagagataaaaga-aaggaaattcattatatttttcattgattctaaatttctaa |
14029371 |
T |
 |
| Q |
500 |
t----aagacatacaatatttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
| |||||||| ||| ||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14029370 |
tccacaagacatataatgtttatataggcttgtgcatactcattataagata |
14029319 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 399 - 681
Target Start/End: Original strand, 42513062 - 42513346
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| ||||||||| | |||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
42513062 |
tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca |
42513160 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||| ||||| | |
|
|
| T |
42513161 |
taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctag |
42513260 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
681 |
Q |
| |
|
||||||||||||||||||||||| | ||||||| |||||||| |||||| | ||||||||| |||||||||||||||||| |||| |
|
|
| T |
42513261 |
atccttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca |
42513346 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 38572287 - 38572488
Alignment:
| Q |
474 |
attatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactcaatatta |
572 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
38572287 |
attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta |
38572386 |
T |
 |
| Q |
573 |
tctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaat |
672 |
Q |
| |
|
|| |||| ||| ||||||| ||||||| |||||||||||||||| | ||||||| |||||||| ||||||| |||||||| || ||||||||||| |
|
|
| T |
38572387 |
tcccctaacaagataccttctagatccttttagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaat |
38572486 |
T |
 |
| Q |
673 |
at |
674 |
Q |
| |
|
|| |
|
|
| T |
38572487 |
at |
38572488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 478 - 574
Target Start/End: Complemental strand, 41712364 - 41712267
Alignment:
| Q |
478 |
tatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatc |
574 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||| ||||||||| |
|
|
| T |
41712364 |
tatttttcattcattctcataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatc |
41712267 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 418 - 570
Target Start/End: Complemental strand, 49017258 - 49017104
Alignment:
| Q |
418 |
tagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatt |
515 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||||| ||| | | |||| ||||||||||||||| | |||||||||||| |||||||| | |
|
|
| T |
49017258 |
tagggatcacactccataaattagagagagaaactagagataaaagaaaga-aaatatattatatttttcattaagtctcataataaggcatacaatgct |
49017160 |
T |
 |
| Q |
516 |
tatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatat |
570 |
Q |
| |
|
|||| | ||||||| ||| |||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
49017159 |
tatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatat |
49017104 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 30456456 - 30456308
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||| |||| | |
|
|
| T |
30456456 |
tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa |
30456358 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
| ||||| |||| ||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
30456357 |
tcataaggcatataatgcttatatagactt-tgcatactcataataagata |
30456308 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 6103056 - 6102956
Alignment:
| Q |
396 |
tattgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattc |
493 |
Q |
| |
|
||||||||| |||||||| |||||| |||||| ||||||||||| |||| |||||||||||||| || ||| |||||||||||||||||||||||||| |
|
|
| T |
6103056 |
tattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattc |
6102957 |
T |
 |
| Q |
494 |
t |
494 |
Q |
| |
|
| |
|
|
| T |
6102956 |
t |
6102956 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 416 - 520
Target Start/End: Complemental strand, 11206604 - 11206499
Alignment:
| Q |
416 |
agtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata |
513 |
Q |
| |
|
||||| ||||||| |||| || |||||| | |||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11206604 |
agtagagatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctcataataaggcatacaatg |
11206506 |
T |
 |
| Q |
514 |
tttatat |
520 |
Q |
| |
|
||||||| |
|
|
| T |
11206505 |
tttatat |
11206499 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 30452847 - 30452703
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||| |||| | |
|
|
| T |
30452847 |
tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa |
30452749 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
| ||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
30452748 |
tcataaggcatacaa----tatatagactt-tgcatactcataataagata |
30452703 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 395 - 681
Target Start/End: Complemental strand, 8123682 - 8123394
Alignment:
| Q |
395 |
atattgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgatt |
492 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||| | || ||||||||| | ||| || ||| |||||| | | ||||||||||||||||||||||||| |
|
|
| T |
8123682 |
atattgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaaga-aaattcattatatttttcattgatt |
8123584 |
T |
 |
| Q |
493 |
ctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatatacctt |
591 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||| | ||| |
|
|
| T |
8123583 |
ctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatctt |
8123484 |
T |
 |
| Q |
592 |
acggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
681 |
Q |
| |
|
||||||||||||||||||| |||| | ||||||| |||||||| |||||| | | ||||||| |||||||||||||||||| |||| |
|
|
| T |
8123483 |
ctagatccttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca |
8123394 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 468 - 684
Target Start/End: Complemental strand, 671542 - 671325
Alignment:
| Q |
468 |
aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactca |
566 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
671542 |
aaattcattatatttttcattaattctcataataaggcatacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactca |
671443 |
T |
 |
| Q |
567 |
atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttatt |
666 |
Q |
| |
|
|||||||| |||| ||||||| |||| ||||||||||||||||||||||||| | ||||| | ||||| || | ||||| ||| |||| || |||||||| |
|
|
| T |
671442 |
atattatcccctaacaatatatcttatggatccttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttatt |
671343 |
T |
 |
| Q |
667 |
ctaaatatcccatcagtt |
684 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
671342 |
ctaaatatcctatcagtt |
671325 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 398 - 525
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
| Q |
398 |
ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc |
495 |
Q |
| |
|
||||||| |||||||| ||||| ||||||| |||| || |||||| | |||||| ||| |||||| | | |||||||||||||||||||||||||||| |
|
|
| T |
41709651 |
ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattctc |
41709553 |
T |
 |
| Q |
496 |
ataataagacatacaatatttatatagact |
525 |
Q |
| |
|
|||||||| |||||||| |||||||||||| |
|
|
| T |
41709552 |
ataataaggcatacaatgtttatatagact |
41709523 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 399 - 543
Target Start/End: Complemental strand, 24108848 - 24108702
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagagaa--aaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| |||||| ||| |||||||||| || | | || |||||||||||||||||||||| |||| | |
|
|
| T |
24108848 |
tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaa-acaaaaggaaattcattatatttttcattggttctaa |
24108750 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttg-tgcatactcataataa |
543 |
Q |
| |
|
| |||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
24108749 |
tcataagacatacaatgcttatatagacttgttgcatactcataataa |
24108702 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 399 - 493
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaatt--agagaaaaactagagataagagagaaataaattcattatatttttcattgattc |
493 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||| || ||||| || |||||||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
10321869 |
tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagaga-aaggaaattcattat-tttttcattgattc |
10321963 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 4e-59; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 398 - 675
Target Start/End: Complemental strand, 4834870 - 4834589
Alignment:
| Q |
398 |
ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc |
495 |
Q |
| |
|
||||||| ||||||||| ||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||||||||| |
|
|
| T |
4834870 |
ttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattcta |
4834772 |
T |
 |
| Q |
496 |
ataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatata--cctta |
592 |
Q |
| |
|
||||| || |||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||| || ||| |||| |
|
|
| T |
4834771 |
ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt |
4834672 |
T |
 |
| Q |
593 |
cggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatc |
675 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| ||||||| |||||||| | ||||| || || |||||||||||||| |
|
|
| T |
4834671 |
tagatccttctagattaaggtgagtcataataacttctagaacttactgagtcaccacattcgtagtcattattctaaatatc |
4834589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 399 - 683
Target Start/End: Complemental strand, 33242998 - 33242714
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| |||| |||||||||| | ||||||| |||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
33242998 |
tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaaga-aaagaaattcattatatttttcattgattctca |
33242900 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |||||| ||| |
|
|
| T |
33242899 |
taataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaa |
33242801 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagt |
683 |
Q |
| |
|
|||||| |||| |||| ||| || | | ||||| |||||||| ||||||| | | ||||||| |||||||||| ||||||| |||||| |
|
|
| T |
33242800 |
atccttatagactaagatgactcataacaacttctagaactagctgagtcaccatattagtgctccttattct-aatatcctatcagt |
33242714 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 399 - 670
Target Start/End: Complemental strand, 7415789 - 7415516
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| | |||| || ||||||||||||| |||| |||||||||| | ||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
7415789 |
tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca |
7415691 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
||||||| |||||||| |||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||||| |||| ||| ||| || | |
|
|
| T |
7415690 |
taataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctag |
7415591 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaa |
670 |
Q |
| |
|
||||||||| |||||| |||||| | ||| || |||||||| ||||||| | |||||||| || ||||||||| |
|
|
| T |
7415590 |
atccttctaaattaagatgagtcataatattttctagaactagctgagtcaccacattagtactcattattctaa |
7415516 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 399 - 654
Target Start/End: Complemental strand, 7426736 - 7426479
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattaga--gaaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| |||||||| || ||| |||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
7426736 |
tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaaga-aaattcattatatttttcattgattctca |
7426638 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
||||||| |||||||| ||||||||||||| || ||||| ||||||||| |||||||| ||||||||||||||||||| |||| ||| ||| ||| | |
|
|
| T |
7426637 |
taataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctag |
7426538 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacatta |
654 |
Q |
| |
|
||||| |||||||||| ||||| | ||| || |||||||| ||||||| | |||||| |
|
|
| T |
7426537 |
atcctactagattaagatgagttataatattttctagaactagctgagtcaccacatta |
7426479 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 399 - 670
Target Start/End: Complemental strand, 7422797 - 7422524
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| || | |||||||||| | ||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
7422797 |
tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca |
7422699 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
||||||| |||||||| |||||||||||| || ||||| ||||||||| |||||||| ||||||||||||| ||||| |||| ||| ||| ||| | |
|
|
| T |
7422698 |
taataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctag |
7422599 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaa |
670 |
Q |
| |
|
||||||||| |||||| ||| || | ||| || |||||||| || |||| | |||||||| || ||||||||| |
|
|
| T |
7422598 |
atccttctaaattaagatgattcataatattttctagaactagctaagtcaccacattagtactcattattctaa |
7422524 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 681
Target Start/End: Complemental strand, 13886585 - 13886454
Alignment:
| Q |
550 |
gcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgcta |
649 |
Q |
| |
|
||||||||||||||| ||||||| | | || ||||||||||| |||| ||||||||||||||||||| | |||| || |||||||| | ||||| | | |
|
|
| T |
13886585 |
gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcataataatttatagaactagcagagtcacca |
13886486 |
T |
 |
| Q |
650 |
cattagtgttccttattctaaatatcccatca |
681 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||| |
|
|
| T |
13886485 |
cattagtgctccttattctaactatcctatca |
13886454 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||||||||| | |
|
|
| T |
13886691 |
tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctaa |
13886593 |
T |
 |
| Q |
497 |
taat |
500 |
Q |
| |
|
|||| |
|
|
| T |
13886592 |
taat |
13886589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 399 - 681
Target Start/End: Original strand, 18583886 - 18584170
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||| ||| ||| |||| |||||| |||| |||||||||||||| ||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
18583886 |
tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaaga-aaggaaattcagtatatttttcattgattctca |
18583984 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagatag-tgcaccctaacatactcaatattatctcctaccaatataccttacgg |
595 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| |||| |||||||||| | |
|
|
| T |
18583985 |
taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag |
18584084 |
T |
 |
| Q |
596 |
atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca |
681 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||| ||||| || || | | |||||| || |||||||||||||||||| |||| |
|
|
| T |
18584085 |
atccttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca |
18584170 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 399 - 547
Target Start/End: Original strand, 23405475 - 23405624
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| |||||||||||||| |||| || |||||| | |||||||||| |||||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
23405475 |
tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca |
23405573 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||||||| |||| ||||||| |
|
|
| T |
23405574 |
taataaggcatacaatgtttagatagacttgtgcatacacatagtaagata |
23405624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 553 - 681
Target Start/End: Complemental strand, 13087700 - 13087573
Alignment:
| Q |
553 |
ccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacat |
652 |
Q |
| |
|
||||||||||||| |||||||| |||| ||||||||||| |||| | ||||||||||||||||| | ||||||| |||||||| | ||||| | |||| |
|
|
| T |
13087700 |
ccctaacatactcgatattatcccctaacaatataccttctagatcgt-ctagattaaggtgagtcataataacttctagaactagccgagtcaccacat |
13087602 |
T |
 |
| Q |
653 |
tagtgttccttattctaaatatcccatca |
681 |
Q |
| |
|
|| || |||||||||| ||||||| |||| |
|
|
| T |
13087601 |
taatgctccttattctgaatatcctatca |
13087573 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 13087763 - 13087701
Alignment:
| Q |
464 |
aaataaattcattatattttt-cattgattctcataataagacatacaatatttatatagact |
525 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
13087763 |
aaataaattcattgtattttttcattcattctcataataaggcatacaatacttatatagact |
13087701 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 44762117 - 44761971
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| || |||||| | |||||| ||| |||||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
44762117 |
tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaa-aaattcattatatttttcattgattttca |
44762019 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataag |
544 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
44762018 |
taataaggcatacaatgtttatatagacttgtgcatacacatagtaag |
44761971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 44765424 - 44765278
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||| ||| |||| || |||||| | |||||| ||| |||||| | | ||||||||||||||||||||||||| ||| |
|
|
| T |
44765424 |
tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattttca |
44765326 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataag |
544 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
44765325 |
taataaggaatacaatgtttatatagacttgtgcatacacatagtaag |
44765278 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 416 - 547
Target Start/End: Original strand, 45327421 - 45327553
Alignment:
| Q |
416 |
agtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata |
513 |
Q |
| |
|
||||||||||||| |||| |||||| |||| |||| ||||||||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
45327421 |
agtagggatcacactccagaaattaagagagaaaattagagataaaaga-aaagaaatttattatatttttcattttttctcataataagacatacaatg |
45327519 |
T |
 |
| Q |
514 |
tttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| |
|
|
| T |
45327520 |
cttatatagacttgtgcatacacatagtaagata |
45327553 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 506 - 637
Target Start/End: Complemental strand, 31211731 - 31211599
Alignment:
| Q |
506 |
atacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttcta |
604 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| |||| ||||||| ||| ||||||||| |
|
|
| T |
31211731 |
atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta |
31211632 |
T |
 |
| Q |
605 |
gattaaggtgagtcgtgataacttttagaacta |
637 |
Q |
| |
|
|||||| ||||||| | | ||||| |||||||| |
|
|
| T |
31211631 |
gattaaagtgagtcataacaacttctagaacta |
31211599 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 31211963 - 31211857
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| | |||||| ||||||||||||| |||| |||||| |||| |||||||||||||| ||| | | ||||||||||||||||||||||||||||| |
|
|
| T |
31211963 |
tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaga-aaattcattatatttttcattgattctca |
31211865 |
T |
 |
| Q |
497 |
taataaga |
504 |
Q |
| |
|
|||||||| |
|
|
| T |
31211864 |
taataaga |
31211857 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 36050813 - 36050668
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
36050813 |
tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca |
36050716 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataag |
544 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
36050715 |
taataaggcatacaatgtttatatagacttgtgcatacacatagtaag |
36050668 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 36054072 - 36053927
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
36054072 |
tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca |
36053975 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataag |
544 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||| |||| |||| |
|
|
| T |
36053974 |
taataaggcatacaatgtttatatagacttgtgcatacacatagtaag |
36053927 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 27387770 - 27387621
Alignment:
| Q |
399 |
tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca |
496 |
Q |
| |
|
|||||| |||||||| ||||||||||||| |||| || |||||| | ||||||||||| | || ||| ||||||||||||||||||||| | || | |
|
|
| T |
27387770 |
tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaagga-aaagaaattcattatatttttcattcctgctaa |
27387672 |
T |
 |
| Q |
497 |
taataagacatacaatatttatatagacttgtgcatactcataataagata |
547 |
Q |
| |
|
|||| || |||||||| |||||||||||||||||| ||| |||||||||| |
|
|
| T |
27387671 |
taatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagata |
27387621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 521 - 637
Target Start/End: Original strand, 20441042 - 20441158
Alignment:
| Q |
521 |
agacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcg |
619 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||| |||||||||||| | || |||||||| || ||| |||||| ||||||||||||| |
|
|
| T |
20441042 |
agacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaattaaggtgagtca |
20441140 |
T |
 |
| Q |
620 |
tgataacttttagaacta |
637 |
Q |
| |
|
| | ||||| |||||||| |
|
|
| T |
20441141 |
taacaacttctagaacta |
20441158 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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