View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288R-Insertion-3 (Length: 933)

Name: NF3288R-Insertion-3
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288R-Insertion-3
NF3288R-Insertion-3
[»] chr3 (5 HSPs)
chr3 (9-877)||(55211303-55212163)
chr3 (468-681)||(30911921-30912135)
chr3 (399-591)||(36326448-36326640)
chr3 (472-628)||(32414655-32414816)
chr3 (407-547)||(14029319-14029469)
[»] chr7 (8 HSPs)
chr7 (399-681)||(42513062-42513346)
chr7 (474-674)||(38572287-38572488)
chr7 (478-574)||(41712267-41712364)
chr7 (418-570)||(49017104-49017258)
chr7 (399-547)||(30456308-30456456)
chr7 (396-494)||(6102956-6103056)
chr7 (416-520)||(11206499-11206604)
chr7 (399-547)||(30452703-30452847)
[»] chr5 (5 HSPs)
chr5 (395-681)||(8123394-8123682)
chr5 (468-684)||(671325-671542)
chr5 (398-525)||(41709523-41709651)
chr5 (399-543)||(24108702-24108848)
chr5 (399-493)||(10321869-10321963)
[»] chr6 (7 HSPs)
chr6 (398-675)||(4834589-4834870)
chr6 (399-683)||(33242714-33242998)
chr6 (399-670)||(7415516-7415789)
chr6 (399-654)||(7426479-7426736)
chr6 (399-670)||(7422524-7422797)
chr6 (550-681)||(13886454-13886585)
chr6 (399-500)||(13886589-13886691)
[»] chr1 (4 HSPs)
chr1 (399-681)||(18583886-18584170)
chr1 (399-547)||(23405475-23405624)
chr1 (553-681)||(13087573-13087700)
chr1 (464-525)||(13087701-13087763)
[»] chr8 (2 HSPs)
chr8 (399-544)||(44761971-44762117)
chr8 (399-544)||(44765278-44765424)
[»] chr2 (3 HSPs)
chr2 (416-547)||(45327421-45327553)
chr2 (506-637)||(31211599-31211731)
chr2 (399-504)||(31211857-31211963)
[»] chr4 (4 HSPs)
chr4 (399-544)||(36050668-36050813)
chr4 (399-544)||(36053927-36054072)
chr4 (399-547)||(27387621-27387770)
chr4 (521-637)||(20441042-20441158)


Alignment Details
Target: chr3 (Bit Score: 720; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 720; E-Value: 0
Query Start/End: Original strand, 9 - 877
Target Start/End: Original strand, 55211303 - 55212163
Alignment:
9 agtacaagatatgagagatacttttgttccattgattttttaaaaattacacttgtttgaatttagcaacccagatggtggaaaatataatcttttctcc 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55211303 agtacaagatatgagagatacttttgttccattgatttgttaaaaattacacttgtttgaatttagcaacccagatggtggaaaatataatcttttctcc 55211402  T
109 agatggataaatttatacaaaacgattttcatcttctccatttgaatgacgaaattctgacgagatgttttttaagcaagtaatgctacaacaacccgat 208  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55211403 agatggataaatttatacaaaacgatattcatcttctccatttgaatgacgaaattctgacgagatgttttttaagcaagtaatgctacaacaacccgat 55211502  T
209 atccaaagattctatttatttccatgccaacaactttggactgccacattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatc 308  Q
    |||||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55211503 atccaaagattctatttatttccatgccaac---tgtggactgccacattaccttaccacacatttcaccgaagctacaattcattgcttcaacaaaatc 55211599  T
309 atggcaatatgttttattgttaggcgagaagtgttctcccactgccaaactaaacagtagcagaagatgcacaagaagtgttgctgatattgatactacc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |    
55211600 atggcaatatgttttattgttaggcgagaagtgttctcccactgccaaaccaaacagtagcagaagatgcacaacaagtgttgctgatattgatactatc 55211699  T
409 caatttaagtagggatcacattccataaattagagaaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacata 508  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
55211700 caatttaagtaggaagcacattccataaattagagaaaaactagagataagagagaaataaattcattatatttttcattgattctcataataaggcata 55211799  T
509 caatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagat 607  Q
    |||     ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||    
55211800 caa-----atatagacttgtgcatattcataataagataagtgcaccctaacatactcaatattatcccctaccaatataccttatggatccttttagat 55211894  T
608 taaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagttagcgcaagaaatccaaatttcca 707  Q
    |||| ||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| ||    
55211895 taagatgagtcgtgataacttttagaactagccgagtcgccacattagtgctccttattctaaatatcctatcagtt-gcgcaagaaatccaaatttaca 55211993  T
708 tggcatcaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactgctctgacttcgtcgaatgattcatgtgtttgaa 807  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
55211994 tggcaacaatatatgattgcctttatgaacacttataggctttcttagacaaacgttgagaagactactctgacttcgtcgaatgattcatctgtttgaa 55212093  T
808 cttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtgcacaggttctg 877  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
55212094 cttgaaataatttattttagaggtacaaaagttatgaaggtacatagaatctagaggtacagaggttctg 55212163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 468 - 681
Target Start/End: Complemental strand, 30912135 - 30911921
Alignment:
468 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactca 566  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
30912135 aaattcattatatttttcattgattctcataataaggcatacaatacttatatagacttgtgcatactcacaataaaataagtgcaccctaacatactca 30912036  T
567 atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttatt 666  Q
    |||||||| |||| ||| |||  ||   |||||||||||||||||||||||| | ||||||| |||||||||| |||||   ||||||||  || |||||    
30912035 atattatcccctaacaagatatattttagatccttctagattaaggtgagtcataataacttctagaactaaccgagtcatcacattagtactcattatt 30911936  T
667 ctaaatatcccatca 681  Q
    |||| ||||| ||||    
30911935 ctaagtatcctatca 30911921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 399 - 591
Target Start/End: Complemental strand, 36326640 - 36326448
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
36326640 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 36326542  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatatacctt 591  Q
    ||||||  ||||||||  |||||||||||  ||||||||||||||||  | |||||||||||||||||||||||| ||| |||| ||| |||||||    
36326541 taataaagcatacaatgcttatatagact--tgcatactcataataacctaagtgcaccctaacatactcaatatcatcccctaacaagatacctt 36326448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 472 - 628
Target Start/End: Complemental strand, 32414816 - 32414655
Alignment:
472 tcattatatttttcattgattctcataataagacatacaatatttatatagac----ttgtgcatactcataataagat-agtgcaccctaacatactca 566  Q
    ||||||||||||| |||||||||| ||||||| |||||||| |||||||||||    ||||||| ||||| |||||||| |||||||| ||||||||| |    
32414816 tcattatattttttattgattctcgtaataaggcatacaatgtttatatagacttgtttgtgcaaactcaaaataagataagtgcaccataacatactta 32414717  T
567 atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataactt 628  Q
    |||||||| ||   |||||||||||   ||||||| ||| |||||||||||| | |||||||    
32414716 atattatccccagacaatataccttctagatccttataggttaaggtgagtcataataactt 32414655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 407 - 547
Target Start/End: Complemental strand, 14029469 - 14029319
Alignment:
407 cccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca-----taa 499  Q
    |||||||  ||||||||||||| |||| || ||||||  | ||||||||||||| ||| ||  ||||||||||||||||||||||||||| |     |||    
14029469 cccaattcgagtagggatcacactccagaatttagagtgagaaactagagataaaaga-aaggaaattcattatatttttcattgattctaaatttctaa 14029371  T
500 t----aagacatacaatatttatatagacttgtgcatactcataataagata 547  Q
    |    |||||||| ||| ||||||||| ||||||||||||||| ||||||||    
14029370 tccacaagacatataatgtttatataggcttgtgcatactcattataagata 14029319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 1e-74; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 399 - 681
Target Start/End: Original strand, 42513062 - 42513346
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| |||||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
42513062 tgatacgacccaattcgagtagggatcacactccagaaattagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 42513160  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||  ||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||| ||||| |||||   |    
42513161 taataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagaccttctag 42513260  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca 681  Q
    ||||||||||||||||||||||| | ||||||| ||||||||  |||||| | ||||||||| |||||||||||||||||| ||||    
42513261 atccttctagattaaggtgagtcataataacttctagaactagatgagtcaccacattagtgctccttattctaaatatcctatca 42513346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 474 - 674
Target Start/End: Original strand, 38572287 - 38572488
Alignment:
474 attatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactcaatatta 572  Q
    ||||||||||| ||| |||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||| ||| |||||||| ||||||||||||    
38572287 attatattttttattaattctcataataaggcatacaatgtttatatagacttgggcatattcataataagataagtgtaccctaacttactcaatatta 38572386  T
573 tctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaat 672  Q
    || |||| ||| |||||||   ||||||| |||||||||||||||| | ||||||| |||||||| |||||||   ||||||||  || |||||||||||    
38572387 tcccctaacaagataccttctagatccttttagattaaggtgagtcataataacttctagaactagctgagtcagcacattagtactcattattctaaat 38572486  T
673 at 674  Q
    ||    
38572487 at 38572488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 478 - 574
Target Start/End: Complemental strand, 41712364 - 41712267
Alignment:
478 tatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatc 574  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||||||||||||| |||||||||    
41712364 tatttttcattcattctcataataagacatacaatacttatatagacttgtgcctactcataataaaataagtgcaccctaacatacttaatattatc 41712267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 418 - 570
Target Start/End: Complemental strand, 49017258 - 49017104
Alignment:
418 tagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaatatt 515  Q
    ||||||||||| ||||||||||||||| |  |||||||||||| ||| | | ||||  ||||||||||||||| | |||||||||||| ||||||||  |    
49017258 tagggatcacactccataaattagagagagaaactagagataaaagaaaga-aaatatattatatttttcattaagtctcataataaggcatacaatgct 49017160  T
516 tatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatat 570  Q
    |||| | ||||||| ||| |||||||||||| |||||| | |||||||||||||||    
49017159 tatacaaacttgtggatagtcataataagataagtgcatcataacatactcaatat 49017104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 30456456 - 30456308
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
30456456 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30456358  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagata 547  Q
    | ||||| |||| |||  |||||||||||| ||||||||||||||||||||    
30456357 tcataaggcatataatgcttatatagactt-tgcatactcataataagata 30456308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 396 - 494
Target Start/End: Complemental strand, 6103056 - 6102956
Alignment:
396 tattgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattc 493  Q
    ||||||||| ||||||||  |||||| |||||| ||||||||||| |||| |||||||||||||| ||  ||| ||||||||||||||||||||||||||    
6103056 tattgatacaacccaattcgagtaggaatcacactccataaattaagagagaaaactagagataaaagcaaaaaaaattcattatatttttcattgattc 6102957  T
494 t 494  Q
    |    
6102956 t 6102956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 416 - 520
Target Start/End: Complemental strand, 11206604 - 11206499
Alignment:
416 agtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 513  Q
    ||||| ||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||||||||| ||||||||     
11206604 agtagagatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctcataataaggcatacaatg 11206506  T
514 tttatat 520  Q
    |||||||    
11206505 tttatat 11206499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 30452847 - 30452703
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||  |||| |    
30452847 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattcgttctaa 30452749  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagata 547  Q
    | ||||| |||||||    ||||||||||| ||||||||||||||||||||    
30452748 tcataaggcatacaa----tatatagactt-tgcatactcataataagata 30452703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 3e-60; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 395 - 681
Target Start/End: Complemental strand, 8123682 - 8123394
Alignment:
395 atattgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgatt 492  Q
    |||||||||| ||||||||  |||| |||||||| | || |||||||||  | ||| || ||| |||||| | | |||||||||||||||||||||||||    
8123682 atattgatacgacccaattcgagtatggatcacacttcagaaattagagggagaaattaaagaaaagagaaaga-aaattcattatatttttcattgatt 8123584  T
493 ctcataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatatacctt 591  Q
    ||||||||||  ||||||||  |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| ||||| | |||    
8123583 ctcataataaagcatacaatgcttatatagacttgtgcatactcataataagataagtgtaccctaacatactcaatattatcccctaacaatagatctt 8123484  T
592 acggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca 681  Q
       ||||||||||||||||||| |||| | ||||||| ||||||||  |||||| | | ||||||| |||||||||||||||||| ||||    
8123483 ctagatccttctagattaaggtcagtcataataacttctagaactagatgagtcaccagattagtgctccttattctaaatatcctatca 8123394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 468 - 684
Target Start/End: Complemental strand, 671542 - 671325
Alignment:
468 aaattcattatatttttcattgattctcataataagacatacaatatttatatagacttgtgcatactcataataagata-gtgcaccctaacatactca 566  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||  ||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||    
671542 aaattcattatatttttcattaattctcataataaggcatacaatgattatataaacttgtgcatactcataataagataagtgtaccctaacctactca 671443  T
567 atattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttatt 666  Q
    |||||||| |||| ||||||| |||| ||||||||||||||||||||||||| | ||||| | ||||| || | ||||| ||| |||| || ||||||||    
671442 atattatcccctaacaatatatcttatggatccttctagattaaggtgagtcataataacatctagaattagccgagtcactatattaatgctccttatt 671343  T
667 ctaaatatcccatcagtt 684  Q
    |||||||||| |||||||    
671342 ctaaatatcctatcagtt 671325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 398 - 525
Target Start/End: Complemental strand, 41709651 - 41709523
Alignment:
398 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 495  Q
    ||||||| ||||||||  ||||| ||||||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||||||    
41709651 ttgatacgacccaattcgagtagagatcacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattctc 41709553  T
496 ataataagacatacaatatttatatagact 525  Q
    |||||||| |||||||| ||||||||||||    
41709552 ataataaggcatacaatgtttatatagact 41709523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 399 - 543
Target Start/End: Complemental strand, 24108848 - 24108702
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagagaa--aaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||  |||  |||||||||| || | | ||  |||||||||||||||||||||| |||| |    
24108848 tgatacgacccaattcgagtagggatcacactccagaaattaaggaagaaaactagagacaa-acaaaaggaaattcattatatttttcattggttctaa 24108750  T
497 taataagacatacaatatttatatagacttg-tgcatactcataataa 543  Q
    | ||||||||||||||  ||||||||||||| ||||||||||||||||    
24108749 tcataagacatacaatgcttatatagacttgttgcatactcataataa 24108702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 399 - 493
Target Start/End: Original strand, 10321869 - 10321963
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaatt--agagaaaaactagagataagagagaaataaattcattatatttttcattgattc 493  Q
    |||||| ||||||||| ||||||||||||| ||||||| ||  ||||| || |||||||||||||| ||  ||||||||||| ||||||||||||||    
10321869 tgatacgacccaatttgagtagggatcacactccataatttagagagataagctagagataagaga-aaggaaattcattat-tttttcattgattc 10321963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 4e-59; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 398 - 675
Target Start/End: Complemental strand, 4834870 - 4834589
Alignment:
398 ttgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctc 495  Q
    ||||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||     
4834870 ttgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattcta 4834772  T
496 ataataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatata--cctta 592  Q
    ||||| || ||||||||  |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||  || |||  ||||     
4834771 ataatgaggcatacaatgcttatatagacttatgcatactcataataagataagtgcaccctaacatactcaatattatcccctaataagatactccttt 4834672  T
593 cggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatc 675  Q
      |||||||||||||||||||||||| | ||||||| ||||||| |||||||| | ||||| ||  || ||||||||||||||    
4834671 tagatccttctagattaaggtgagtcataataacttctagaacttactgagtcaccacattcgtagtcattattctaaatatc 4834589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 399 - 683
Target Start/End: Complemental strand, 33242998 - 33242714
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||| ||||||| |||| |||||||||| |  ||||||| |||| ||| ||| |||||||||||||||||||||||||||||    
33242998 tgatacgacccaattcgagtagagatcacactccagaaattagagagagaaactagaaataaaaga-aaagaaattcattatatttttcattgattctca 33242900  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||| ||||||  |||        
33242899 taataaggcatacaatgcttatatagacttgtgcatactcataataagataagtgca-cctaacatactcaatattatcccctaacaatatgtcttctaa 33242801  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatcagt 683  Q
    |||||| |||| |||| ||| || | | ||||| |||||||| ||||||| | | ||||||| |||||||||| ||||||| ||||||    
33242800 atccttatagactaagatgactcataacaacttctagaactagctgagtcaccatattagtgctccttattct-aatatcctatcagt 33242714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 399 - 670
Target Start/End: Complemental strand, 7415789 - 7415516
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| | |||| || ||||||||||||| |||| |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
7415789 tgatacgatccaacttgagtagggatcacactccagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7415691  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||| ||||||||  |||||||||||| ||  ||||||||||||||| |||||||| ||||||||||||||||||| |||| ||| |||  ||   |    
7415690 taataaggcatacaatgcttatatagacttatgtgtactcataataagataagtgcaccataacatactcaatattatcccctaacaagataatttctag 7415591  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaa 670  Q
    ||||||||| |||||| |||||| | |||  || |||||||| ||||||| | ||||||||  || |||||||||    
7415590 atccttctaaattaagatgagtcataatattttctagaactagctgagtcaccacattagtactcattattctaa 7415516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 399 - 654
Target Start/End: Complemental strand, 7426736 - 7426479
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattaga--gaaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| ||||||||  || ||| |||||| |||||| | | |||||||||||||||||||||||||||||    
7426736 tgatacgacccaattcgagtagggatcacactccagaaattagaaagagaaattagagaaaagagaaaga-aaattcattatatttttcattgattctca 7426638  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||| |||||||| ||||||||||||| ||  ||||| ||||||||| |||||||| ||||||||||||||||||| |||| ||| ||| |||   |    
7426637 taataaggcatacaatgtttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatattatcccctaacaagataacttctag 7426538  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacatta 654  Q
    ||||| |||||||||| |||||  | |||  || |||||||| ||||||| | ||||||    
7426537 atcctactagattaagatgagttataatattttctagaactagctgagtcaccacatta 7426479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 399 - 670
Target Start/End: Complemental strand, 7422797 - 7422524
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagagaaa--aactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| || | |||||||||| |  ||||||||| |||||| | | |||||||||||||||||||||||||||||    
7422797 tgatacgacccaattcgagtagggatcacactcaagaaattagagagagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 7422699  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||| ||||||||  |||||||||||| ||  ||||| ||||||||| |||||||| ||||||||||||| ||||| |||| ||| ||| |||   |    
7422698 taataaggcatacaatgcttatatagacttatgtgtactcttaataagataagtgcaccataacatactcaatgttatcccctaacaagataacttctag 7422599  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaa 670  Q
    ||||||||| |||||| ||| || | |||  || |||||||| || |||| | ||||||||  || |||||||||    
7422598 atccttctaaattaagatgattcataatattttctagaactagctaagtcaccacattagtactcattattctaa 7422524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 550 - 681
Target Start/End: Complemental strand, 13886585 - 13886454
Alignment:
550 gcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgcta 649  Q
    ||||||||||||||| ||||||| | | || |||||||||||   |||| ||||||||||||||||||| | |||| || |||||||| | ||||| | |    
13886585 gcaccctaacatacttaatattaccccttaacaatataccttttagatctttctagattaaggtgagtcataataatttatagaactagcagagtcacca 13886486  T
650 cattagtgttccttattctaaatatcccatca 681  Q
    |||||||| |||||||||||| ||||| ||||    
13886485 cattagtgctccttattctaactatcctatca 13886454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 13886691 - 13886589
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||| ||||||||||||| |||| || ||||||  | |||||||||| |||||| | | ||||||||||||||||||||||||||| |    
13886691 tgatacgacccaatttgagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctaa 13886593  T
497 taat 500  Q
    ||||    
13886592 taat 13886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 114; Significance: 2e-57; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 399 - 681
Target Start/End: Original strand, 18583886 - 18584170
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||| ||| ||| |||| |||||| |||| |||||||||||||| ||| ||  ||||||| |||||||||||||||||||||    
18583886 tgatacgacccaattcgagtagagattacactccagaaattaagagagaaaactagagataaaaga-aaggaaattcagtatatttttcattgattctca 18583984  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagatag-tgcaccctaacatactcaatattatctcctaccaatataccttacgg 595  Q
    ||||||  ||||||||  ||||||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||| ||||  ||||||||||   |    
18583985 taataaagcatacaatgcttatatagacttgtgcatacttataatacgataactgcaccctaacatactcaatattatcccctaataatataccttttag 18584084  T
596 atccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacattagtgttccttattctaaatatcccatca 681  Q
    ||||||||||||||||||||||| | |||||||||| ||||| || || | | |||||| || |||||||||||||||||| ||||    
18584085 atccttctagattaaggtgagtcataataacttttataactagctaagccaccacattaatgctccttattctaaatatcctatca 18584170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 399 - 547
Target Start/End: Original strand, 23405475 - 23405624
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| |||||||| |||||||||||||| |||| || ||||||  | |||||||||| |||||| | | |||||||||||||||||||||||||||||    
23405475 tgatacgacccaattcaagtagggatcacactccagaatttagagggagaaactagagaaaagagaaaga-aaattcattatatttttcattgattctca 23405573  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagata 547  Q
    ||||||| |||||||| |||| |||||||||||||||| |||| |||||||    
23405574 taataaggcatacaatgtttagatagacttgtgcatacacatagtaagata 23405624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 553 - 681
Target Start/End: Complemental strand, 13087700 - 13087573
Alignment:
553 ccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcgtgataacttttagaactaactgagtcgctacat 652  Q
    ||||||||||||| |||||||| |||| |||||||||||   |||| | ||||||||||||||||| | ||||||| |||||||| | ||||| | ||||    
13087700 ccctaacatactcgatattatcccctaacaatataccttctagatcgt-ctagattaaggtgagtcataataacttctagaactagccgagtcaccacat 13087602  T
653 tagtgttccttattctaaatatcccatca 681  Q
    || || |||||||||| ||||||| ||||    
13087601 taatgctccttattctgaatatcctatca 13087573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 13087763 - 13087701
Alignment:
464 aaataaattcattatattttt-cattgattctcataataagacatacaatatttatatagact 525  Q
    ||||||||||||| ||||||| |||| |||||||||||||| ||||||||| |||||||||||    
13087763 aaataaattcattgtattttttcattcattctcataataaggcatacaatacttatatagact 13087701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 44762117 - 44761971
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | |||||| ||| |||||| ||| ||||||||||||||||||||||||| |||    
44762117 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactatagaaaagagaaaaa-aaattcattatatttttcattgattttca 44762019  T
497 taataagacatacaatatttatatagacttgtgcatactcataataag 544  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
44762018 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 44761971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 44765424 - 44765278
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||| ||| |||| || ||||||  | |||||| ||| |||||| | | ||||||||||||||||||||||||| |||    
44765424 tgatacgacccaattcgagtagggattacactccagaatttagagggagaaactatagaaaagagaaaga-aaattcattatatttttcattgattttca 44765326  T
497 taataagacatacaatatttatatagacttgtgcatactcataataag 544  Q
    |||||||  ||||||| ||||||||||||||||||||| |||| ||||    
44765325 taataaggaatacaatgtttatatagacttgtgcatacacatagtaag 44765278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 3e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 416 - 547
Target Start/End: Original strand, 45327421 - 45327553
Alignment:
416 agtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctcataataagacatacaata 513  Q
    ||||||||||||| |||| |||||| |||| |||| ||||||||| ||| ||| ||||| |||||||||||||||  ||||||||||||||||||||||     
45327421 agtagggatcacactccagaaattaagagagaaaattagagataaaaga-aaagaaatttattatatttttcattttttctcataataagacatacaatg 45327519  T
514 tttatatagacttgtgcatactcataataagata 547  Q
     |||||||||||||||||||| |||| |||||||    
45327520 cttatatagacttgtgcatacacatagtaagata 45327553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 506 - 637
Target Start/End: Complemental strand, 31211731 - 31211599
Alignment:
506 atacaatatttatatagacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttcta 604  Q
    |||||||| |||||||||||| |||||||||||| |||||| ||||||| |||||||||||||||||||| |||| ||||||| |||    |||||||||    
31211731 atacaatacttatatagacttatgcatactcatattaagataagtgcactctaacatactcaatattatcccctaacaatatatcttctaaatccttcta 31211632  T
605 gattaaggtgagtcgtgataacttttagaacta 637  Q
    |||||| ||||||| | | ||||| ||||||||    
31211631 gattaaagtgagtcataacaacttctagaacta 31211599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 504
Target Start/End: Complemental strand, 31211963 - 31211857
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaatta-gaga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| | ||||||  ||||||||||||| |||| |||||| |||| |||||||||||||| ||| | | |||||||||||||||||||||||||||||    
31211963 tgatacgatccaattcgagtagggatcacactccagaaattaagagagaaaactagagataaaagaaaga-aaattcattatatttttcattgattctca 31211865  T
497 taataaga 504  Q
    ||||||||    
31211864 taataaga 31211857  T

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Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 36050813 - 36050668
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
36050813 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36050716  T
497 taataagacatacaatatttatatagacttgtgcatactcataataag 544  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
36050715 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36050668  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 399 - 544
Target Start/End: Complemental strand, 36054072 - 36053927
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattaga-ga-aaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| |||||| | || |||||||||||||| ||| ||| |||||||||||||||||||||    ||||    
36054072 tgatacgacccaattcgagtagggatcacactccaaaaattaaaagagaaaactagagataaaaga-aaagaaattcattatatttttcatttcc-ctca 36053975  T
497 taataagacatacaatatttatatagacttgtgcatactcataataag 544  Q
    ||||||| |||||||| ||||||||||||||||||||| |||| ||||    
36053974 taataaggcatacaatgtttatatagacttgtgcatacacatagtaag 36053927  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 399 - 547
Target Start/End: Complemental strand, 27387770 - 27387621
Alignment:
399 tgatactacccaatttaagtagggatcacattccataaattagag--aaaaactagagataagagagaaataaattcattatatttttcattgattctca 496  Q
    |||||| ||||||||  ||||||||||||| |||| || ||||||  | ||||||||||| |  || ||| |||||||||||||||||||||  | || |    
27387770 tgatacgacccaattcgagtagggatcacactccagaatttagagggagaaactagagatgaagga-aaagaaattcattatatttttcattcctgctaa 27387672  T
497 taataagacatacaatatttatatagacttgtgcatactcataataagata 547  Q
    |||| || ||||||||  |||||||||||||||||| ||| ||||||||||    
27387671 taatgaggcatacaatgcttatatagacttgtgcatcctcgtaataagata 27387621  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 521 - 637
Target Start/End: Original strand, 20441042 - 20441158
Alignment:
521 agacttgtgcatactcataataagat-agtgcaccctaacatactcaatattatctcctaccaatataccttacggatccttctagattaaggtgagtcg 619  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||||||| | || |||||||| ||   ||| |||||| |||||||||||||     
20441042 agacttgtgcatactcataataagataagtgcaccctgacatgctcaatattatcccttaacaatatactttttagat-cttctaaattaaggtgagtca 20441140  T
620 tgataacttttagaacta 637  Q
    | | ||||| ||||||||    
20441141 taacaacttctagaacta 20441158  T

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