View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-4 (Length: 835)
Name: NF3288R-Insertion-4
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-4 |
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| [»] scaffold0134 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 9 - 420
Target Start/End: Original strand, 7839848 - 7840259
Alignment:
| Q |
9 |
tttacacagaacagcgattgaaattctagaagcttcgattgcttgtagaagtgaaagtctgatttcttcgccgatgttgaggtttggatcgtctctgaag |
108 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |
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| T |
7839848 |
tttacacagaacaacgattgaaattctagaagcttcgattgcttgtagaagtgaaagtctgatttcgtcgccgatgttaaggtttggattgtctctgaag |
7839947 |
T |
|
| Q |
109 |
acgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgggtgaagtctt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7839948 |
acgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgagtgaagtctt |
7840047 |
T |
|
| Q |
209 |
cgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatcaagtgtggagcttca |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7840048 |
cgtcttcgtgattctccattagcgtgatgattatggtatgttttgattagtggaactgtagaaatgtttgtttgagttttaaatcaagtgtggagcttca |
7840147 |
T |
|
| Q |
309 |
aaagtcagaagaaagcgggatcactatgaaccggtctacatgatggtgcttgctgagttaattggatttcattttttaagtgttttgttaatcacctgag |
408 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7840148 |
aaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatgcttgctgagttaattggatttcattttttaagtgttttgttaatcacctgag |
7840247 |
T |
|
| Q |
409 |
acactcattcta |
420 |
Q |
| |
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|||||||||||| |
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| T |
7840248 |
acactcattcta |
7840259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 468 - 773
Target Start/End: Original strand, 7840259 - 7840570
Alignment:
| Q |
468 |
aggcaataattacaaatatttaaaagagtttttagagacacttgttaacatttcactttaattaataatattatgttattattacttaatcttttttatn |
567 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
7840259 |
aggcaataattacaaatatttaaaagagtttttagagacactcgttaacatttcactttaattaataatattatgtttttattacttaatcttttttata |
7840358 |
T |
|
| Q |
568 |
nnnnnnnn------ttaatgatgattggataagtactaaacttaattgttttattgatcactgtcggtactcttctctcttgtcaaccagctagatgttc |
661 |
Q |
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| T |
7840359 |
aaaaaaaaaaaaaattaatgatgattggataagtactaaacttaattgttttattgatcactgccggtactcttctctcttgtcaaccagctagatgttc |
7840458 |
T |
|
| Q |
662 |
ctcccaagtgttagatatttatttagtagcggtcttggacactattcacattatttggtgggcaaggaattctttgaggttctcaaatgcctactgtaca |
761 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7840459 |
ctcccaagtgttagatatttatttagtagcggtcttgcacactattcacattatttggtgggcaaggaattctttgaggttctcaaatgcctattgtaca |
7840558 |
T |
|
| Q |
762 |
ttcagctaaggt |
773 |
Q |
| |
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|||||||||||| |
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| T |
7840559 |
ttcagctaaggt |
7840570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 9 - 211
Target Start/End: Original strand, 7755721 - 7755923
Alignment:
| Q |
9 |
tttacacagaacagcgattgaaattctagaagcttcgattgcttgtagaagtgaaagtctgatttcttcgccgatgttgaggtttggatcgtctctgaag |
108 |
Q |
| |
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||||||||| ||| ||||||| |||||||||||||||||||||||||| |||||| ||| |||||| | |||||| ||||||||| | ||||||||||| |
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| T |
7755721 |
tttacacagcacaacgattgagattctagaagcttcgattgcttgtaggagtgaaggtccgatttcatggccgatcttgaggttttggtcgtctctgaaa |
7755820 |
T |
|
| Q |
109 |
acgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgggtgaagtctt |
208 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| || ||||| ||||| ||||| |||| |
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| T |
7755821 |
acgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtgagtgaaatctt |
7755920 |
T |
|
| Q |
209 |
cgt |
211 |
Q |
| |
|
||| |
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|
| T |
7755921 |
cgt |
7755923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 23 - 203
Target Start/End: Original strand, 7763191 - 7763371
Alignment:
| Q |
23 |
cgattgaaattctagaagcttcgattgcttgtagaagtgaaagtctgatttcttcgccgatgttgaggtttggatcgtctctgaagacgttgattccgtg |
122 |
Q |
| |
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||||||| |||||||||||||| ||||||| |||||||||| || |||||| || |||||||||| |||| ||||||||||||||||||||||||| || |
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| T |
7763191 |
cgattgagattctagaagcttcaattgcttttagaagtgaagttccgatttcatcaccgatgttgatgttttgatcgtctctgaagacgttgattccatg |
7763290 |
T |
|
| Q |
123 |
acggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtgggtgaa |
203 |
Q |
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||||||||| || | ||||||||||| ||||||||||||||||||| |||||||||||| || || | |||||| ||||| |
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| T |
7763291 |
acggagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgtgtgtgaa |
7763371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 7756000 - 7756075
Alignment:
| Q |
278 |
gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcactatgaaccggtctacatgatg |
353 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||| ||||||| || | ||| |||||||||||||| |
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| T |
7756000 |
gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatg |
7756075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 587 - 832
Target Start/End: Original strand, 1531 - 1786
Alignment:
| Q |
587 |
tggataagtactaaacttaattgttttattgatc-----actgtcggtactcttctctcttgtcaaccagctagatgttcctcccaagtgttagatattt |
681 |
Q |
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|||||| || ||||||| || ||||||||||||| |||||||| ||||| || ||||||| |||||| |||| || ||||||||||| || |||| |
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| T |
1531 |
tggataggtgctaaactgaactgttttattgatcgttctactgtcggcactctcctatcttgtcggccagctcgatgctcatcccaagtgttggagattt |
1630 |
T |
|
| Q |
682 |
atttagtagcggtcttggacactattcacattatttggtgggcaaggaattctttgaggttctcaaatg-----cctactgtacattcagctaaggtccg |
776 |
Q |
| |
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| |||| |||||| || ||||||| |||| ||||||||||||| |||| ||||||||||||||| ||| ||| || |||||||||| ||||| || |
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| T |
1631 |
acttagcagcggt-ttacacactatccacactatttggtgggcacggaactctttgaggttctcagatgtactaccttctatacattcagccaaggttcg |
1729 |
T |
|
| Q |
777 |
tatacactcatttatagcaatctcagaaaatgtttctaagggtaacag-ttaccttc |
832 |
Q |
| |
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||| ||||| |||| ||||| |||| ||||||||| |||||| |||| |||||||| |
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| T |
1730 |
tattcactctcttattgcaatgtcaggaaatgtttcaaagggtcacagcttaccttc |
1786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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