View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288R-Insertion-5 (Length: 784)

Name: NF3288R-Insertion-5
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288R-Insertion-5
NF3288R-Insertion-5
[»] chr4 (9 HSPs)
chr4 (8-701)||(55907344-55908037)
chr4 (726-784)||(55907252-55907310)
chr4 (310-412)||(661854-661956)
chr4 (235-360)||(3437630-3437755)
chr4 (242-342)||(547943-548043)
chr4 (246-359)||(1755485-1755598)
chr4 (63-198)||(547773-547908)
chr4 (314-361)||(571330-571377)
chr4 (322-361)||(553767-553806)
[»] chr2 (5 HSPs)
chr2 (8-559)||(1036422-1036973)
chr2 (363-701)||(1036086-1036424)
chr2 (726-784)||(1035994-1036052)
chr2 (564-615)||(44575173-44575224)
chr2 (309-359)||(45244859-45244909)
[»] chr5 (2 HSPs)
chr5 (546-614)||(41900247-41900315)
chr5 (314-355)||(20477455-20477496)
[»] chr8 (9 HSPs)
chr8 (9-183)||(17627169-17627343)
chr8 (311-411)||(14004140-14004240)
chr8 (309-425)||(17642880-17642996)
chr8 (57-100)||(44244814-44244857)
chr8 (314-403)||(17635623-17635712)
chr8 (311-411)||(5766564-5766664)
chr8 (315-359)||(32151969-32152013)
chr8 (314-361)||(21236154-21236201)
chr8 (330-368)||(18314640-18314678)
[»] chr7 (2 HSPs)
chr7 (309-364)||(10615708-10615763)
chr7 (307-421)||(7977866-7977980)
[»] chr1 (2 HSPs)
chr1 (312-394)||(7555196-7555278)
chr1 (316-376)||(33161200-33161260)
[»] chr6 (7 HSPs)
chr6 (309-364)||(6417087-6417142)
chr6 (563-616)||(6403848-6403901)
chr6 (309-361)||(7132300-7132352)
chr6 (316-359)||(6395539-6395582)
chr6 (310-361)||(7135224-7135275)
chr6 (310-361)||(7138147-7138198)
chr6 (316-361)||(6423907-6423952)
[»] chr3 (2 HSPs)
chr3 (546-611)||(513428-513493)
chr3 (305-364)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (322-403)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (322-403)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (322-403)||(30616-30697)


Alignment Details
Target: chr4 (Bit Score: 666; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 666; E-Value: 0
Query Start/End: Original strand, 8 - 701
Target Start/End: Complemental strand, 55908037 - 55907344
Alignment:
Q  8 aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55908037 aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc 55907938  T
Q  108 aaaagtgacgagtcatctatattataataacccgaaagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa 207  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907937 aaaagtgacgagtcgtctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa 55907838  T
Q  208 aatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagc 307  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  55907837 aatctctactagcgaaaggattactactactgaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttacgtagagaagc 55907738  T
Q  308 aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa 407  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907737 aatgttggaacaaatgagagaattcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa 55907638  T
Q  408 gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgtcgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaata 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  55907637 gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaaga 55907538  T
Q  508 gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagattt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907537 gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagattt 55907438  T
Q  608 caagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907437 caagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaattatcagataaataacaattatttacagctgtcacagttgtg 55907344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 726 - 784
Target Start/End: Complemental strand, 55907310 - 55907252
Alignment:
Q  726 gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttact 784  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  55907310 gtgtttctgaaagcaaccagtttactcaacctcattgttgttgttcttcttcttttact 55907252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 310 - 412
Target Start/End: Original strand, 661854 - 661956
Alignment:
Q  310 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagt 409  Q
    ||||| ||||||||||||| || ||||||||||||| ||||||||||||||| || ||| ||||||| ||| | | |||||||||||||||||| || ||    
T  661854 tgttgtaacaaatgagagaggttaaagttgtaatatattgggagaaagctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgt 661953  T
Q  410 gat 412  Q
    |||    
T  661954 gat 661956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 235 - 360
Target Start/End: Complemental strand, 3437755 - 3437630
Alignment:
Q  235 tactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaa 334  Q
    |||||| ||||||| ||||||| ||||||||||||||||| |||||||  || |    || ||| ||| || ||| |||||||||| ||||||| |||||    
T  3437755 tactaaggtcaagtacttcaagtaaagggaagcaatcagagataagaattagatagcggtcatggagaaaatcaaagttggaacaactgagagaggtcaa 3437656  T
Q  335 agttgtaatattttgggagaaagctc 360  Q
    ||||||||| ||||||||||||||||    
T  3437655 agttgtaatcttttgggagaaagctc 3437630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 342
Target Start/End: Original strand, 547943 - 548043
Alignment:
Q  242 gtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgta 341  Q
    |||||||||||||||||||||||||||| |||| |||  ||| ||||| ||||||   |||||| |||||||||||||| |||||||  |||||||||||    
T  547943 gtcaagttcttcaaggaaagggaagcaaccagatatacaaaccaggtcgttgttacagagagaatcaatgttggaacaagtgagagagttcaaagttgta 548042  T
Q  342 a 342  Q
    |    
T  548043 a 548043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 246 - 359
Target Start/End: Original strand, 1755485 - 1755598
Alignment:
Q  246 agttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagcaatgttggaacaaatgagagaagtcaaagttgtaatat 345  Q
    ||||||||||| |||||||| || |||| ||| || |  | ||||||| |||| |||  ||| |||||||||||  ||||||| |||||||||||||| |    
T  1755485 agttcttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatct 1755584  T
Q  346 tttgggagaaagct 359  Q
    |||| |||||||||    
T  1755585 tttgagagaaagct 1755598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 63 - 198
Target Start/End: Original strand, 547773 - 547908
Alignment:
Q  63 aacatcataacctcttcaagaaactcacaattcttacataaatgcaaaagtgacgagtcatctatattataataacccgaaagattaaccttgcggagct 162  Q
    ||||||| || |||||| |||||||||||| | | ||| || || |||||  | ||||||| |||||  |||| ||| || | |||||||||||||||||    
T  547773 aacatcacaaactcttcgagaaactcacaactttgacacaagtgaaaaagcaatgagtcatttatatagtaatgaccagataaattaaccttgcggagct 547872  T
Q  163 taggaagcaccattgccatagtctttacccaaacat 198  Q
    |||||||| |  ||| ||||| |||||||| |||||    
T  547873 taggaagcgctgttgacatagcctttaccccaacat 547908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 571330 - 571377
Alignment:
Q  314 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    ||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  571330 ggaacaattgagagatgtcaaagttgtaatattttgggagaatgctcg 571377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 322 - 361
Target Start/End: Original strand, 553767 - 553806
Alignment:
Q  322 tgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  553767 tgagagaggtcaaagttgtaatgttttgggagaaagctcg 553806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 488; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 8 - 559
Target Start/End: Complemental strand, 1036973 - 1036422
Alignment:
Q  8 aggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036973 aggtctctcacggatagcagaagcgacatcatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgc 1036874  T
Q  108 aaaagtgacgagtcatctatattataataacccgaaagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa 207  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036873 aaaagtgacgagtcgtctatattataataacccgagagattaaccttgcggagcttaggaagcaccattgccatagtctttacccaaacattcatatcaa 1036774  T
Q  208 aatctctactagcgaaaggattactactactaaagtcaagttcttcaaggaaagggaagcaatcagaaataagaacaaggtcattgttatgtagagaagc 307  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||  || ||||||    
T  1036773 aatctctactagcgaaaggattactactattgaagtcaagttcttcaaggaaaggaaagcaatcagaaataagaacaagatcattgttacatatagaagc 1036674  T
Q  308 aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036673 aatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaa 1036574  T
Q  408 gtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgtcgtaggaactaagatcaaggtaggtaatgtaggtgaacctttggaata 507  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |    
T  1036573 gtgatatttaatggaaaaggtatttggtagagaagcgcgttgaggtcaccgttgtaggaactaagatcaaggtaggtaatgttggtgaacctttggaaga 1036474  T
Q  508 gacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaag 559  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1036473 gacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaag 1036422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 363 - 701
Target Start/End: Complemental strand, 1036424 - 1036086
Alignment:
Q  363 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagtgcgttgaggtcaccgtcgt 462  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||    
T  1036424 aagccagtagcggggatgataggttggttggagagattgagcgaagtgatatttaatggaaaaggtatttggcagagaagcgcgttgaggtcaccgttgt 1036325  T
Q  463 aggaactaagatcaaggtaggtaatgtaggtgaacctttggaatagacgagggaggaaagtgcaagtttgatagaggataattagagagaatcgaagagt 562  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1036324 aggaactaagatcaaggtaggtaatgttggtgaacctttggaagagacgagggaggaaagtgcaagtttgatagaggatagttagagagaatcgaagagt 1036225  T
Q  563 gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcgttgatcagaaatgtgaagacatattcccaacaatta 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  1036224 gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcgaggattgtcattgatcagaaatgtgaagacatattccgaacaatta 1036125  T
Q  663 tcagataaataacaattatttacagctgtcacagttgtg 701  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1036124 tcagataaataacaattatttacagctgtcacagttgtg 1036086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 726 - 784
Target Start/End: Complemental strand, 1036052 - 1035994
Alignment:
Q  726 gtgtttctgaaagcaaccagtttactcaacctcattgttgttcttcttcttcttttact 784  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1036052 gtgtttctgaaagcaaccagtttattcaacctcattgttgttcttcttcttcttttact 1035994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 564 - 615
Target Start/End: Complemental strand, 44575224 - 44575173
Alignment:
Q  564 ttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagc 615  Q
    ||||||| ||||||||||||||| |||||| | |||||||| ||||||||||    
T  44575224 ttggtgattgagagaaactgttttgagacgatggagagagacttcaagtagc 44575173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 45244909 - 45244859
Alignment:
Q  309 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 359  Q
    |||||| ||||||||||||| |||||| || ||||| ||||||||||||||    
T  45244909 atgttgtaacaaatgagagaggtcaaatttctaatagtttgggagaaagct 45244859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 546 - 614
Target Start/End: Complemental strand, 41900315 - 41900247
Alignment:
Q  546 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaagtag 614  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||    
T  41900315 agagagaatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaagtag 41900247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Complemental strand, 20477496 - 20477455
Alignment:
Q  314 ggaacaaatgagagaagtcaaagttgtaatattttgggagaa 355  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  20477496 ggaacaactgagagaggtcaaagttttaatattttgggagaa 20477455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 17627343 - 17627169
Alignment:
Q  9 ggtctctcacggatagcagaagcgacaccatcatgagttaaaaatggacatttcaacatcataacctcttcaagaaactcacaattcttacataaatgca 108  Q
    |||||||||||||| |||||||| |  ||||||  ||||||  ||| | | || |||| || ||||||||| |||||||||||||| ||||| || ||||    
T  17627343 ggtctctcacggatggcagaagcaatgccatcacaagttaaggatgaatacttgaacaacacaacctcttcgagaaactcacaatttttacacaagtgca 17627244  T
Q  109 aaagtgacgagtcatctatattataataacccgaaagattaaccttgcggagcttaggaagcaccattgccatag 183  Q
    ||||| | ||||||  |||||  |||| ||  || | ||| | |||||||||||||||||||||||||| |||||    
T  17627243 aaagtaatgagtcacttatatcgtaatgacgagataaatttatcttgcggagcttaggaagcaccattgacatag 17627169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 311 - 411
Target Start/End: Original strand, 14004140 - 14004240
Alignment:
Q  311 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 410  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | ||| ||||||||||| ||||||||||| |||    
T  14004140 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgggttggttggaaagattgagcgatgtg 14004239  T
Q  411 a 411  Q
    |    
T  14004240 a 14004240  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 309 - 425
Target Start/End: Complemental strand, 17642996 - 17642880
Alignment:
Q  309 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaag 408  Q
    |||| ||||||| ||||||| ||||||||||||||||| |||||||||||| |||| ||| | | ||| ||| |  | ||||||||||||||||| || |    
T  17642996 atgtgggaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatg 17642897  T
Q  409 tgatatttaatggaaaa 425  Q
    |||  || |||||||||    
T  17642896 tgagtttcaatggaaaa 17642880  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 100
Target Start/End: Original strand, 44244814 - 44244857
Alignment:
Q  57 catttcaacatcataacctcttcaagaaactcacaattcttaca 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  44244814 catttcaacatcctaacctcttcaagaaactcacaattcttaca 44244857  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 17635712 - 17635623
Alignment:
Q  314 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 403  Q
    ||||||| ||||||| |||||||||||||||||  |||||||||||||||| ||| |||  || ||| |  |||||||||| ||||||||    
T  17635712 ggaacaagtgagagaggtcaaagttgtaatattccgggagaaagctcgtaacccattagttggaatggtgagttggttggacagattgag 17635623  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 311 - 411
Target Start/End: Complemental strand, 5766664 - 5766564
Alignment:
Q  311 gttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcgaagtg 410  Q
    |||||||||||| || || |||||||||||||| || || ||||||||||| || ||| |||| || | |||  |||||||||| ||||||||||| |||    
T  5766664 gttggaacaaataagtgaggtcaaagttgtaatgttctgagagaaagctcgcaaaccattagcaggaaggatgagttggttggaaagattgagcgatgtg 5766565  T
Q  411 a 411  Q
    |    
T  5766564 a 5766564  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  315 gaacaaatgagagaagtcaaagttgtaatattttgggagaaagct 359  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 21236154 - 21236201
Alignment:
Q  314 ggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| |||||    
T  21236154 ggaacaattgagagatgtcaaagttgtagtattttgggagaatgctcg 21236201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 330 - 368
Target Start/End: Complemental strand, 18314678 - 18314640
Alignment:
Q  330 gtcaaagttgtaatattttgggagaaagctcgtaagcca 368  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  18314678 gtcaaagttgtaatattttgagagaaaactcgtaagcca 18314640  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 10615708 - 10615763
Alignment:
Q  309 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 364  Q
    |||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||||    
T  10615708 atgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaa 10615763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 7977866 - 7977980
Alignment:
Q  307 caatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgagcga 406  Q
    ||||||| |||||  |||| || |||||||||| |||||||||||||||| || | || |||  ||| || ||| |||| ||||||||||||||||| ||    
T  7977866 caatgttagaacatttgagtgaggtcaaagttgcaatattttgggagaaaactggcaacccataagccggaatggtagggtggttggagagattgagtga 7977965  T
Q  407 agtgatatttaatgg 421  Q
     ||||| || |||||    
T  7977966 cgtgattttcaatgg 7977980  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 7555196 - 7555278
Alignment:
Q  312 ttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttgga 394  Q
    ||||||||| |||| || || ||||||||||||||||||||||||||||| || ||| | || |||||| | |||||||||||    
T  7555196 ttggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcagggatggtgggttggttgga 7555278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 316 - 376
Target Start/End: Original strand, 33161200 - 33161260
Alignment:
Q  316 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggg 376  Q
    ||||| ||||||||||||||||| ||||  |||||||||||| ||| |||||| |||||||    
T  33161200 aacaagtgagagaagtcaaagttttaatggtttgggagaaagttcgcaagccattagcggg 33161260  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 6417087 - 6417142
Alignment:
Q  309 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 364  Q
    |||| ||||||| ||||||| |||||||||||| | ||||||||||||||||||||    
T  6417087 atgtgggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaa 6417142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 616
Target Start/End: Original strand, 6403848 - 6403901
Alignment:
Q  563 gttggtgactgagagaaactgtttggagacggttgagagagatttcaagtagcg 616  Q
    ||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||    
T  6403848 gttggtgatagagaggaactgtttggatacggctgagagagatttcaagtagcg 6403901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 7132300 - 7132352
Alignment:
Q  309 atgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    ||||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7132300 atgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7132352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 359
Target Start/End: Original strand, 6395539 - 6395582
Alignment:
Q  316 aacaaatgagagaagtcaaagttgtaatattttgggagaaagct 359  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||    
T  6395539 aacaactgagagaggtcaaagttgtaatattttgggagagagct 6395582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 7135224 - 7135275
Alignment:
Q  310 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7135224 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7135275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Original strand, 7138147 - 7138198
Alignment:
Q  310 tgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    |||||||||||  |||||| | |||||||||||| |||||||||||||||||    
T  7138147 tgttggaacaatcgagagatgccaaagttgtaatgttttgggagaaagctcg 7138198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 6423907 - 6423952
Alignment:
Q  316 aacaaatgagagaagtcaaagttgtaatattttgggagaaagctcg 361  Q
    ||||| ||||||| ||||||||||| || |||||||||||||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcg 6423952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 546 - 611
Target Start/End: Complemental strand, 513493 - 513428
Alignment:
Q  546 agagagaatcgaagagtgttggtgactgagagaaactgtttggagacggttgagagagatttcaag 611  Q
    ||||||||||| ||| |||||||||  ||||| |||||||| |||||||  |||||||||||||||    
T  513493 agagagaatcggagattgttggtgatggagagtaactgttttgagacggcggagagagatttcaag 513428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 13469714 - 13469655
Alignment:
Q  305 agcaatgttggaacaaatgagagaagtcaaagttgtaatattttgggagaaagctcgtaa 364  Q
    |||||||| ||||||| ||||||| ||||  |||||| | ||||||||||||||||||||    
T  13469714 agcaatgtgggaacaagtgagagaggtcagcgttgtattcttttgggagaaagctcgtaa 13469655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 1934 - 1853
Alignment:
Q  322 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 403  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  1934 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 1853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 8282 - 8363
Alignment:
Q  322 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 403  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  8282 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 8363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 30697 - 30616
Alignment:
Q  322 tgagagaagtcaaagttgtaatattttgggagaaagctcgtaagccagtagcggggatgataggttggttggagagattgag 403  Q
    |||||| | |||||||||||||||||||||| ||| |||| || |||   ||||| || || ||||||| ||||||||||||    
T  30697 tgagagtattcaaagttgtaatattttgggataaaactcgcaacccatctgcgggaattatgggttggtaggagagattgag 30616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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