View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-6 (Length: 608)
Name: NF3288R-Insertion-6
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-6 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 608
Target Start/End: Complemental strand, 48101776 - 48101174
Alignment:
| Q |
9 |
caaaattcaaatcttatctaacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactatt |
108 |
Q |
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| T |
48101776 |
caaaattcaaatcttatctaacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactatt |
48101677 |
T |
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| Q |
109 |
agtcttgattgcagttcttgtcctctatttttaccggctcacataattgatttttcgcgttttaaatccaattttttgttcctcaattatatttttgaat |
208 |
Q |
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| T |
48101676 |
agtcttgattgcagttgttgtcctctatttttatcagctcacgaaattgatttttcgtgttttaaatccaattctttgttcctcaattatattttttaat |
48101577 |
T |
|
| Q |
209 |
caaaaaatgacgtggcaagcttttttattgtcatagtatagaactct--atattataaatccacttgaatgattccaaatcaagtgttttatgtcaataa |
306 |
Q |
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| T |
48101576 |
caaaaaatgacgtggcaagtttttttattgtcatagtatagaactctgtatattataaatccacttgaatgattccaaatcaagtgttttatgtcaataa |
48101477 |
T |
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| Q |
307 |
aaatttgtcaaatgctccaga-ttcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggca |
405 |
Q |
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| T |
48101476 |
aaatttgtcaaatgctccagaattcttagacattgcacaaacttacttgtgttgccaatgcctataaacaaagcagtgtgtgacagaacctaagagggca |
48101377 |
T |
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| Q |
406 |
caatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaaca |
505 |
Q |
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| T |
48101376 |
caatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaaca |
48101277 |
T |
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| Q |
506 |
atggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctgg |
605 |
Q |
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| T |
48101276 |
acggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctgg |
48101177 |
T |
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| Q |
606 |
taa |
608 |
Q |
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| T |
48101176 |
taa |
48101174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 375 - 608
Target Start/End: Complemental strand, 48064154 - 48063921
Alignment:
| Q |
375 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
474 |
Q |
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| T |
48064154 |
aaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttgga |
48064055 |
T |
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| Q |
475 |
aatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
574 |
Q |
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| T |
48064054 |
aatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaac |
48063955 |
T |
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| Q |
575 |
tgaagaaaggaatgatatatactttttctggtaa |
608 |
Q |
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| T |
48063954 |
tgaagaaaggaatgatatacatgttttctggtaa |
48063921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 379 - 608
Target Start/End: Complemental strand, 48068806 - 48068577
Alignment:
| Q |
379 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatg |
478 |
Q |
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|||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| ||||||| ||| |
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| T |
48068806 |
cagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatg |
48068707 |
T |
|
| Q |
479 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
578 |
Q |
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| T |
48068706 |
gaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactgga |
48068607 |
T |
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| Q |
579 |
gaaaggaatgatatatactttttctggtaa |
608 |
Q |
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| T |
48068606 |
gaaagaaatgatatatattttttctggtaa |
48068577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 327 - 608
Target Start/End: Complemental strand, 48107871 - 48107590
Alignment:
| Q |
327 |
attcttagacattgcacaaacttacttatgttaccaatgcctacaaacaaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattaca |
426 |
Q |
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||||||| |||||||| ||| || ||| |||| |||||||| || ||| |||||| ||| ||||||| | || ||||||||||| || || |||| | |
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| T |
48107871 |
attcttaaacattgcataaattttcttgtgttgtcaatgccttggaataaaacagtgtatgaaagaacctcaaagagcacaatatggagggggaattata |
48107772 |
T |
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| Q |
427 |
gtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttg |
526 |
Q |
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| T |
48107771 |
gtaaattccggatttgatcacaacatagagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttg |
48107672 |
T |
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| Q |
527 |
ccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaagaaaggaatgatatatactttttctggtaa |
608 |
Q |
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| T |
48107671 |
ccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaa |
48107590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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