View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-7 (Length: 600)
Name: NF3288R-Insertion-7
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 11 - 199
Target Start/End: Complemental strand, 49073414 - 49073226
Alignment:
| Q |
11 |
gtcaatggaaatcaattccctagcaatcaatctaaatccaacctctctctcacacacacagtcaagaataaaataaaatccataaattgatgttttaaag |
110 |
Q |
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| T |
49073414 |
gtcaatggaaatcaattccctagcaatcaatctaaatccaacctctctctcacacacacagtcaagaataaaataaaatccataaattgatgttttgaag |
49073315 |
T |
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| Q |
111 |
gttaatgaattttatcttttaaatttttgaagaaaggaagatgaaaatagagaaggaagggagaacacctccgttgttgtggtgcacca |
199 |
Q |
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| T |
49073314 |
gttaatgaattttatcttttaattttttgaagaaaggaagatgaaaatagagaaggaagggagaacacctccgttgttgtggtgcacca |
49073226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 258 - 600
Target Start/End: Complemental strand, 29157003 - 29156657
Alignment:
| Q |
258 |
atacttcttttacttaatttcat-atatccattcccttcattgaataatacataaa---tagggg-cagctagccctacatcctagtagctggtggacag |
352 |
Q |
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| T |
29157003 |
atacttcttttacttaatttcattatgcctattcccttgattcaacaatacataaaggctagatgacagctagccctacattctagtagctgcaagaccg |
29156904 |
T |
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| Q |
353 |
ctttcattagtactaaggataagactggtgactcattataatccaacggtcacctctagacaaggacaaa-ca-aaagata-gactttgggaatatagac |
449 |
Q |
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| T |
29156903 |
ctttcatt-gtattaag-ataaga-tggtgactcattataatctaacggtcacctctagataaagacaaaacataaagataaggatgtaaatatatagac |
29156807 |
T |
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| Q |
450 |
ttcttctagaacattcttctaagatgccacctagtgttttttaacaacctgtttaggcacatgataatcattcaaatgcttgggccttgctgtcttgcgt |
549 |
Q |
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| T |
29156806 |
ttcttctgaaacattcttctac-atgccacctagtccttcttgacagccaacttgggctcatggtagtcattcaaccatttgggccttgttgtcttgcgt |
29156708 |
T |
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| Q |
550 |
ttgggtctaaagtgtggcataggtggatcatcctcttcactaagcccatcc |
600 |
Q |
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| T |
29156707 |
ttgggactgaagtgaggtataggtggatcatcctcttcacttagcccatcc |
29156657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 537
Target Start/End: Original strand, 32227361 - 32227513
Alignment:
| Q |
387 |
attataatccaacggtcacctctagacaaggacaaa-ca-aaagatagactttgggaatatagacttcttctagaacattcttctaagatgccacctagt |
484 |
Q |
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| T |
32227361 |
attataatctaatggtcacctctagatagagacaaaacataaagataaacattcggaatatggacttcttctggaacattcctccaatatgccacctagc |
32227460 |
T |
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| Q |
485 |
gttttttaacaacctgtttaggcacatgataatcattcaaatgcttgggcctt |
537 |
Q |
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| T |
32227461 |
gtttcttagtcaccaactttggcacatgatagtcattcaaaaacttgggcctt |
32227513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 146
Target Start/End: Original strand, 9301969 - 9302021
Alignment:
| Q |
95 |
aattgatgtttta-aaggttaatgaattttatcttttaaatttttgaagaaag |
146 |
Q |
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| T |
9301969 |
aattgatgtttttgaagtttaatgaattttatcttttaatttgttgaagaaag |
9302021 |
T |
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