View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-8 (Length: 466)
Name: NF3288R-Insertion-8
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 8 - 466
Target Start/End: Complemental strand, 39812403 - 39811943
Alignment:
| Q |
8 |
agttaatttttcaattacccgattaatgtcaaccggtccaccatttttagtggccaccattggcagtccatgtgcagctgcctgagtgagtttaaacaca |
107 |
Q |
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| T |
39812403 |
agttaatttttcaattacccgattaatgtcaaccggtccaccatttttagtggccaccattggcagtccatgtgcagctgcctgagtgagtttaaacaca |
39812304 |
T |
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| Q |
108 |
tatttaataacacta--acattaaaatgtgaatatgtcaccaaagtggtaagttagttaagacttacctcaattaaagtaagaccaaaaggttccactaa |
205 |
Q |
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| T |
39812303 |
tatttaataacactataacattaaaatgtgaatatgtcaccaaagtggtaagttagttaagacttacctcaattaaagtaagaccaaaaggttccactaa |
39812204 |
T |
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| Q |
206 |
agcaggatttataaaaactccctgagaaaaatatcaaactagttagccagctagctatatcattacgactgcagaagaagtgtgttttgtacatatattc |
305 |
Q |
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| T |
39812203 |
agcaggatttatgaaaactccctgagaaaaatatcaaactagttagttggctagctatatcattacgactgcagaagaagtgtgttttgtacatatattc |
39812104 |
T |
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| Q |
306 |
tacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatatttgtc |
405 |
Q |
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| T |
39812103 |
tacatacctttgttttagcagcaaatctatatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatacttgtc |
39812004 |
T |
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| Q |
406 |
aatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtca |
466 |
Q |
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| T |
39812003 |
aatcagtttcaacacagttgtgagaacattgccactcccagaagacatatcttctatgtca |
39811943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 15799971 - 15799902
Alignment:
| Q |
22 |
ttacccgattaatgtcaaccggtccaccatttttagtggccaccattggcagtccatgtgcagctgcctg |
91 |
Q |
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| T |
15799971 |
ttacccgatgaatgtcgacaggtccaccatttttagtggccaccattggaaggccatgtgctgcagcctg |
15799902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 158 - 228
Target Start/End: Complemental strand, 15799821 - 15799751
Alignment:
| Q |
158 |
ttagttaagacttacctcaattaaagtaagaccaaaaggttccactaaagcaggatttataaaaactccct |
228 |
Q |
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| T |
15799821 |
ttagttaatacctacctcaattaaagtaagaccaaaaggctcaactagtgcaggatttatgaaaacaccct |
15799751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 15799460 - 15799402
Alignment:
| Q |
362 |
tgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatcagtttcaacac |
420 |
Q |
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| T |
15799460 |
tgatgtttagggtatgcaacttgtccatagaggtcatacttatcaatcaacttcaacac |
15799402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 91
Target Start/End: Original strand, 47755368 - 47755436
Alignment:
| Q |
23 |
tacccgattaatgtcaaccggtccaccatttttagtggccaccattggcagtccatgtgcagctgcctg |
91 |
Q |
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| T |
47755368 |
tacccgatgaatatcaacaggaccaccatttttagtagcaaccattggcaacccataagcagctgcctg |
47755436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 410
Target Start/End: Original strand, 47756669 - 47756745
Alignment:
| Q |
334 |
atatatctcaggtacatcagattgtctatgatgtttagggtatgcgacatgtccatataggtcatatttgtcaatca |
410 |
Q |
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| T |
47756669 |
atatatttcaggaacatcagattgtttgtggtgtttaggatatgccacttgcccatacaggtcatacttatcaatca |
47756745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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