View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288R-Insertion-9 (Length: 435)
Name: NF3288R-Insertion-9
Description: NF3288R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288R-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 10385872 - 10386234
Alignment:
| Q |
8 |
aagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgtactttcaattttattcaagtatagagtcagaaagagtaaaata |
107 |
Q |
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| T |
10385872 |
aagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgtactttcaattttattcaagtatagagtcagaaagagtaaaata |
10385971 |
T |
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| Q |
108 |
tgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaagagagagtacactgacaataggaaataatagtatgtgttttgaa |
207 |
Q |
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| T |
10385972 |
tgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaagagagagtacattgacaataggaaataatagtatgtgttttgaa |
10386071 |
T |
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| Q |
208 |
aactttgaannnnnnnattgtcgtcttcccttatctactttagaaacagataacaacacaatttaaccacaaaaaacacttggcgcaatttcgttcagtg |
307 |
Q |
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| T |
10386072 |
aactttgaatttttttactgtcgtcttcccttatctactttagaaacaaataacaacacaatttaaccaaaaaaaacacttggcgcaatttcgttcagtg |
10386171 |
T |
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| Q |
308 |
catttaatc-aaacatagtt-nnnnnnnctaagtttacttaaaatcaaacatagtttcaaata |
368 |
Q |
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| T |
10386172 |
catttaatcaaaacatagttaaaaaaaactaagtttacttaaaatcaaacatagtttcaaata |
10386234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 278 - 435
Target Start/End: Original strand, 10386238 - 10386388
Alignment:
| Q |
278 |
aaaaaacacttggcgcaatttcgttcagtgcatttaatcaaacatagttnnnnnnn--ctaagtttacttaaaatcaaacatagtttcaaatatggttgt |
375 |
Q |
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| T |
10386238 |
aaaaaacccttggcgcaatttcattcagtgcatttaatcaaacataattaaaaaaaaactaagtttacttaaaatcaaacatagtttcaaatatggttgt |
10386337 |
T |
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| Q |
376 |
agaaatttttaatcaaatggcgtttcatattgactgtgaagtttggggttgagttttata |
435 |
Q |
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| T |
10386338 |
agaaatttttaatca--------ttcatattgac-gtgaagtttggggttgagttttata |
10386388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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