View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_13 (Length: 416)
Name: NF3288_high_13
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 161 - 409
Target Start/End: Original strand, 35892277 - 35892528
Alignment:
| Q |
161 |
tatggagctttcgtttt-gtttaacaatgactaatttttgtcgtcaaatctatacacaaccgccgttgaaacatgcgt--ttgtacatcgctccttgtag |
257 |
Q |
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| T |
35892277 |
tatggagctttcgtttttgtttaacaatgactaatttttgtcgtcaaatctgtacacaaccgccgttaaaacatgcgtctttgtacatcgctctttgtag |
35892376 |
T |
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| Q |
258 |
ttagtgaccatacgaacatgaagcatgacttgagtgtatcattgtctagttataccaaattttgactaagtttgatgtcttcaagacctatatattcttt |
357 |
Q |
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| T |
35892377 |
ttagtgaccatacgaacatgaagcatgacttgagtgtatcattgtctagttataccaagttttgactaagtttgatgtcttcaagacctacatattcttt |
35892476 |
T |
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| Q |
358 |
agtagattcgagaaagaatcgactaacctttattcggctgcaatattcttcg |
409 |
Q |
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| T |
35892477 |
agtagattcaagaaagaatcgactaacctttattcggctgcaatattgttcg |
35892528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 35892094 - 35892256
Alignment:
| Q |
1 |
gaaatttaaaaagcttctgcataagaaaatgacccaacactttaaaaaataaagaacaactatataaaaaggtgatagattcttttctttcnnnnnnnag |
100 |
Q |
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| T |
35892094 |
gaaatttaaaaagcttctgcataagaaaatgacccaacacttgaaaaaataaagaacaactatataaaaaggtgatagattcttttctttcttttttaag |
35892193 |
T |
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| Q |
101 |
aagacaagcttatgtagtttctggttatacaaaccgttataatatgaacattacactacttat |
163 |
Q |
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| T |
35892194 |
aagacaagcttatgtagtttctggttatacaaaccgttataatatgaacattacactacttat |
35892256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 397
Target Start/End: Complemental strand, 9635404 - 9635324
Alignment:
| Q |
317 |
ttttgactaagtttgatgtcttcaagacctatatattctttagtagattcgagaaagaatcgactaacctttattcggctg |
397 |
Q |
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| T |
9635404 |
ttttgactaagtcagaagtcttcaagactcaagtattctttagtatactcgagaaagaattgtctcacctttattctgctg |
9635324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 3996390 - 3996455
Alignment:
| Q |
296 |
tcattgtctagttataccaaattttgactaagtttgatgtcttcaagacctatatattctttagta |
361 |
Q |
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| T |
3996390 |
tcattgtccagttctaccaagatttaactaggtgtgatgtcttcaagacctacatattcttcagta |
3996455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 377
Target Start/End: Complemental strand, 49292585 - 49292525
Alignment:
| Q |
317 |
ttttgactaagtttgatgtcttcaagacctatatattctttagtagattcgagaaagaatc |
377 |
Q |
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| T |
49292585 |
ttttgactaagtttgattccttcaagatccacatattttttagcagactcgagaaagaatc |
49292525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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