View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_19 (Length: 347)
Name: NF3288_high_19
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 42083276 - 42083595
Alignment:
| Q |
11 |
aatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctcttcttctgctgagatcaccaagt |
110 |
Q |
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| T |
42083276 |
aatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctcttcttctgctgagatcaccaagt |
42083375 |
T |
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| Q |
111 |
acatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggc |
210 |
Q |
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| T |
42083376 |
acatcttcataatgttcttcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggc |
42083475 |
T |
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| Q |
211 |
ttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaac |
310 |
Q |
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| T |
42083476 |
ttgctgccaactggaatgccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaac |
42083575 |
T |
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| Q |
311 |
accattgctcatgcactttt |
330 |
Q |
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||||||||||||||| |||| |
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| T |
42083576 |
accattgctcatgcaatttt |
42083595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 29 - 327
Target Start/End: Original strand, 42086811 - 42087109
Alignment:
| Q |
29 |
ggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctcttcttctgctgagatcaccaagtacatcttcataatgttct |
128 |
Q |
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| T |
42086811 |
ggttttgtgacttaccttgagtccacctggtttgtcaccaaaactattgatttggcctcttcttgagttgagatcaccaattacatctcctaaatgttct |
42086910 |
T |
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| Q |
129 |
tcaggagtaacaacttcaagtttcattgtaggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatg |
228 |
Q |
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| T |
42086911 |
tcaggagtaacaacttcaactttcattataggttcaagcattctcggtccggcttttcttattccttcccgaaaagctcctcttgctgccaactggaaag |
42087010 |
T |
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| Q |
229 |
ccttcacacttgaatccacatcatggtaagtactatccacaagtactgcgcgtacaccaacaaccggaaagccggctagaacaccattgctcatgcact |
327 |
Q |
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|| |||||||||||| ||||||||||||| || ||||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||| |||| |
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| T |
42087011 |
ccaacacacttgaatctacatcatggtaagaaccatccacaagtactgcacgtacatcgacaactggaaatccggccagaacaccattgctcatacact |
42087109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 257
Target Start/End: Complemental strand, 29242508 - 29242409
Alignment:
| Q |
157 |
taggttcaagcattaatggtttggcttttctcattccttccataaaagctaggcttgctgccaactggaatgccttcacacttgaatccacatcatggta |
256 |
Q |
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|||||||||||||| ||| ||||||||| |||||||| |||| || | |||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
29242508 |
taggttcaagcattttcggtccggcttttcttattccttcttgaaaaactcgtcttgctgccaactgaaa-gccaacacacttgaatccacatcatggta |
29242410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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