View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_20 (Length: 341)
Name: NF3288_high_20
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 54688570 - 54688255
Alignment:
| Q |
10 |
aagaatatggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
109 |
Q |
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| T |
54688570 |
aagaaaatggggtaaataaccttttggatggttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
54688471 |
T |
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| Q |
110 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
209 |
Q |
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| T |
54688470 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
54688371 |
T |
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| Q |
210 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
309 |
Q |
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| T |
54688370 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
54688271 |
T |
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| Q |
310 |
acttattacaagatgt |
325 |
Q |
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| T |
54688270 |
acttattacaagatgt |
54688255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 325
Target Start/End: Complemental strand, 54700503 - 54700200
Alignment:
| Q |
10 |
aagaatatggggtaaataaccttttggattgttccttaaggctattagatgtgtgtagtgcagctaaagatgctttaattcacacaaaagaatgcacaag |
109 |
Q |
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| T |
54700503 |
aagaaaattgggtaaataacctcttggatggatccttaaggctattagatgtgtgtagcgcagccaaagatgctttactgcatacaaaagaatgtacaag |
54700404 |
T |
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| Q |
110 |
ggaacttcaatccctcataagaagaagcaaaagaagaggaagcggtgaagtcgaactcacttcagaagttaagaagttcttgatatccaggaaggtagtg |
209 |
Q |
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| T |
54700403 |
ggaacttcaatccatcataagaagaagg---------gga---gatggattggagctcactgcagaggctaagaaattcatgacatcaagaaaggtagtg |
54700316 |
T |
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| Q |
210 |
agaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaacagtggctttgatta |
309 |
Q |
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| T |
54700315 |
aaaaaggccatctccaaagccttggcaaatttgaagggaaataccaaacatagcaacatcttatctacaaacaatgaccatcaaacagtggctttgatta |
54700216 |
T |
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| Q |
310 |
acttattacaagatgt |
325 |
Q |
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| T |
54700215 |
gcttattacaagatgt |
54700200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 54693102 - 54693016
Alignment:
| Q |
54 |
ttagatgtgtgtagtgcagctaa----agatgctttaattcacacaaaagaatgcacaagggaacttcaatccctcataagaagaag |
136 |
Q |
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| T |
54693102 |
ttagatgtgtgcagtgcagctaattaaagatgctttacttcacacaaaagaatgcacaagggaacttcagtccatcataagaagaag |
54693016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 325
Target Start/End: Complemental strand, 54692971 - 54692842
Alignment:
| Q |
201 |
aaggtagtgagaaagtcaatctccaaaaccttggtaaatttgaagggaaatgccaaaaatagcaacatcttatctacaaacaaagaccatcaaac----- |
295 |
Q |
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| T |
54692971 |
aaggtagtgaaaaaggccatttccaaagccttgacaaatttgaagggcactaccaaatattataacatcttgtctacaaacaaagaccatcaatcagtga |
54692872 |
T |
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| Q |
296 |
agtggctttgattaacttattacaagatgt |
325 |
Q |
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|||| | ||||||||||||||||||||||| |
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| T |
54692871 |
agtgacattgattaacttattacaagatgt |
54692842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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