View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_25 (Length: 281)
Name: NF3288_high_25
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 12652129 - 12651869
Alignment:
| Q |
14 |
aaaaatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctcctcccaag |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12652129 |
aaaaatatctcattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctcctcccaag |
12652030 |
T |
|
| Q |
114 |
aagaaggcattacatcaccgttgagtttcctctaagagttacttctcaggctgtatatctcctaataattagggtcatacatatatattggaacaccctc |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
12652029 |
aagaaggcattacatcaccgttgagtttcctccaagagttacttctgaggctgtatatctcccaataattagggtcatacatatatattggcacaccctc |
12651930 |
T |
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| Q |
214 |
ccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcttctct |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12651929 |
ccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcatctct |
12651869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 274
Target Start/End: Complemental strand, 12647003 - 12646737
Alignment:
| Q |
14 |
aaaaatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcacttgacaacgctcctcccaag |
113 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
12647003 |
aaaaatatctcattgataaagtcaaacgaccccatatcattatctaggttcaaccaatagcaaaattcattcaagttcacctgacaacgctcttcccaag |
12646904 |
T |
|
| Q |
114 |
aagaaggcat-----ta-catcaccgttgagtttcctctaagagttacttctcaggctgtatatctcctaataattagggtcatacatatatattggaac |
207 |
Q |
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| T |
12646903 |
aatcaggcataggtatatcaccaccatcaagtttcctccaagagttacttctgaggctgtatatctcccaataatcaggatcatacatatttattggcac |
12646804 |
T |
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| Q |
208 |
accctcccaaaaatcatcattatcatcaaattccaagtccatctcccagaaagggctattcttctct |
274 |
Q |
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|||| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12646803 |
ccccttccaaaaatcatcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctct |
12646737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 12711996 - 12712072
Alignment:
| Q |
17 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
93 |
Q |
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||||||| ||||||||||||||| ||| | ||||||| | | |||| |||||||| |||||||||||||||||||| |
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| T |
12711996 |
aatatctcattgataaagtcaaatgacacaatatcataagatgggcctaaccaatggcaaaattcattcaagttcac |
12712072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 12516863 - 12516901
Alignment:
| Q |
136 |
gagtttcctctaagagttacttctcaggctgtatatctc |
174 |
Q |
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| T |
12516863 |
gagtttcctccaagagttacttctaaggctgtatatctc |
12516901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Complemental strand, 6117736 - 6117660
Alignment:
| Q |
17 |
aatatctaattgataaagtcaaacgaccccatatcattatctaggcccaaccaatgacaaaattcattcaagttcac |
93 |
Q |
| |
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||||||| ||||||||||||||| ||| | ||||||| | | |||| ||| ||| |||||||||||||||||||| |
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| T |
6117736 |
aatatctcattgataaagtcaaatgacacaatatcatcagatgggcctaacatatggcaaaattcattcaagttcac |
6117660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 22535511 - 22535549
Alignment:
| Q |
137 |
agtttcctctaagagttacttctcaggctgtatatctcc |
175 |
Q |
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| T |
22535511 |
agtttcctccaagagttacttctaaggctgtatatctcc |
22535549 |
T |
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