View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_26 (Length: 263)
Name: NF3288_high_26
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_26 |
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| [»] chr5 (12 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 39472139 - 39472401
Alignment:
| Q |
1 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39472139 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctctatgactg |
39472238 |
T |
|
| Q |
101 |
cgctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgtt |
200 |
Q |
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| T |
39472239 |
cgctcctcgaagctcagaaaccaaacgtcaaacaagtagtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgtt |
39472338 |
T |
|
| Q |
201 |
ctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
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||||||||||||||||||| |||||||||| || || |||||||||||||||||||||||||| |
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| T |
39472339 |
ctgcacaaacatgattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttc |
39472401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 4 - 263
Target Start/End: Original strand, 39454745 - 39455004
Alignment:
| Q |
4 |
tacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgc |
103 |
Q |
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|||| |||||| ||||| |||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||| ||| || |||||| ||| | || | |
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| T |
39454745 |
tacagtaaatctcttccaatctccgattcaatccgcatcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcctccatgtccgctc |
39454844 |
T |
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| Q |
104 |
tccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttctg |
203 |
Q |
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| T |
39454845 |
accttgaagctcagaaaccaaacgtcaaacaagccgtatctaacctcattactggtgaagcaagtggagtcctcgcagctttcgttgttgacatgtcctg |
39454944 |
T |
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| Q |
204 |
cacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
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|||| |||||||||| |||||||||| || || ||||||| || |||||||||||||| |
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| T |
39454945 |
cacagccatgattgatgttgccaaagagttctccatccctacactcgtcttcttcacttc |
39455004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 39451107 - 39451371
Alignment:
| Q |
5 |
acactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctct---atgactgc |
101 |
Q |
| |
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|||||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||| | |||||||| ||| ||||| | || ||| |||| |
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| T |
39451107 |
acactaaatcccttcctatctcagattctctcaacatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgc |
39451206 |
T |
|
| Q |
102 |
gctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttgacatg |
198 |
Q |
| |
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||||| ||||||||||||||||| |||||||||| || |||||||||| ||| || || ||||||||||||| ||| | | |||||||||||| |
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| T |
39451207 |
tctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttgacatg |
39451306 |
T |
|
| Q |
199 |
ttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
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|||||||| | |||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |
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| T |
39451307 |
ttctgcaccaccatgattgatattgccaaagaattttcagttcctatgctcgtcttcttcacttc |
39451371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 39486568 - 39486836
Alignment:
| Q |
1 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactg |
100 |
Q |
| |
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|||||||| ||||||||||| || |||||||| ||||| |||||||||||||||||||||||||| |||||||||| || | | ||| |||| | |
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| T |
39486568 |
gtctacacaaaatcccttcccatttccgattctctccaggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgtcatgaacg |
39486667 |
T |
|
| Q |
101 |
cgctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaa------tggagtccttgccgcttttgttgttga |
194 |
Q |
| |
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| |||||||||||||||||||||||||||||||||| |||||| ||||||| ||| ||| || | | |||| ||||||||| || |||||||| |
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| T |
39486668 |
ctctccttgaagctcagaaaccaaacgtcaaacaagctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttga |
39486767 |
T |
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| Q |
195 |
catgttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
39486768 |
catgttctgcaccaccatgattgatattgccaaagaattttccatccctgcgctcatcttcttcacttc |
39486836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 39460357 - 39460618
Alignment:
| Q |
5 |
acactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgct |
104 |
Q |
| |
|
|||||||||| ||||| | || ||||| ||| |||||||||||||||||||| ||||||| ||||||||| || | | |||| |||| || | |
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| T |
39460357 |
acactaaatcacttcccacttctgattctctcgacatcatcaaccttccagaagtttctcttcccccaaacatcgaaccaacttccagaatgatggcttt |
39460456 |
T |
|
| Q |
105 |
ccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaa---tggagtccttgccgcttttgttgttgacatgttc |
201 |
Q |
| |
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||| |||||||||||| ||||||||||||||| |||||||| |||| ||| | |||||| |||| ||| | || |||||||||||||||||| |
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| T |
39460457 |
cctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactactactagagaaaaacatggaaccctcacagcctttgttgttgacatgttc |
39460556 |
T |
|
| Q |
202 |
tgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39460557 |
tgcactaaaatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
39460618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 263
Target Start/End: Original strand, 39475613 - 39475877
Alignment:
| Q |
5 |
acactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctct---atgactgc |
101 |
Q |
| |
|
|||||||||||||||||||||| || || ||| |||||||||||||||||||| ||||||| |||||||||| |||| ||||| |||| ||||| || |
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| T |
39475613 |
acactaaatcccttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagc |
39475712 |
T |
|
| Q |
102 |
gctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttgacatg |
198 |
Q |
| |
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||||| |||||||||||||||||||| ||||||| ||| || ||||||| ||| ||| || || ||||| ||| ||||| || |||||||||||| |
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| T |
39475713 |
tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatg |
39475812 |
T |
|
| Q |
199 |
ttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
|
|||||||| | |||||| || ||||||| || || ||||||||||| || ||||||||||| |
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| T |
39475813 |
ttctgcaccaccatgatcaatgttgccaatgagttcaatgtccctacgctcgttttcttcacttc |
39475877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 39470823 - 39470561
Alignment:
| Q |
1 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactg |
100 |
Q |
| |
|
|||||| |||||||| |||| ||||| ||||| ||||| ||||||||||||||||| |||| || ||||| | | |||| |||||| ||||| | |
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| T |
39470823 |
gtctacgctaaatccattcccatctctgattctctccatgtcatcaaccttccagaagtttctgttctcccaacctctgatccaggttcggatatgaacg |
39470724 |
T |
|
| Q |
101 |
cgctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgtt |
200 |
Q |
| |
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| ||||| |||||||| ||| ||||||||||||||| | | || ||||||| ||| || | || ||||| ||| |||||| | ||||||||||||| |
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| T |
39470723 |
ctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggagaacaacatggacccctcgccgctgtcattgttgacatgtt |
39470624 |
T |
|
| Q |
201 |
ctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| || |||| || |||||||| |
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| T |
39470623 |
ctgcacaaacatgattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttc |
39470561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 263
Target Start/End: Complemental strand, 39458251 - 39458098
Alignment:
| Q |
110 |
aagctcagaaaccaaacgtcaaacaagttgtatctaacctcattaccagatcagaaaatggagtccttgccgcttttgttgttgacatgttctgcacaaa |
209 |
Q |
| |
|
||||||||||||||||||||||| ||| || || ||||||| || | |||||||||||||||| || || || ||||||||||||||||||| | |
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| T |
39458251 |
aagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaaagcaccagaaaatggagtcctagctgcattcattgttgacatgttctgcaccac |
39458152 |
T |
|
| Q |
210 |
catgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
39458151 |
catgattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttc |
39458098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 39464435 - 39464359
Alignment:
| Q |
187 |
gttgttgacatgttctgcacaaacatgattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttc |
263 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||| |||||||| |||||| || |||| ||||||||||| |
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| T |
39464435 |
gttgttgacatgttctgcaccaacatgattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttc |
39464359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 39464600 - 39464451
Alignment:
| Q |
1 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactg |
100 |
Q |
| |
|
||||||||||||||| |||| || || ||||| || | ||||||||||||||||| ||||||| ||| || | | |||| ||||||| |||||| | |
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| T |
39464600 |
gtctacactaaatccattcccatatctgattctcttaatgtcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgctatgaacg |
39464501 |
T |
|
| Q |
101 |
cgctccttgaagctcagaaaccaaacgtcaaacaagttgtatctaacctc |
150 |
Q |
| |
|
| |||||||| ||||| ||||||||||||||||||| || ||||||||| |
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| T |
39464500 |
ctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaacctc |
39464451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 227
Target Start/End: Original strand, 39483405 - 39483592
Alignment:
| Q |
43 |
atcaaccttccagaatgttctcttgccccaaacacagatcaaggttcctctatgactgcgctccttgaagctcagaaaccaaacgtcaaacaagttgtat |
142 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||| || ||| | || | || |||||||||||||||||||||||| | | ||||| ||| | |
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| T |
39483405 |
atcaaccttccagaatgttatcttcccccaaacttcgatctagtttctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctgtct |
39483504 |
T |
|
| Q |
143 |
ctaacctcattaccagatcag---aaaatggagtccttgccgcttttgttgttgacatgttctgcacaaacatgattgatattgccaa |
227 |
Q |
| |
|
| ||||||| ||| ||| || || ||||| ||| |||| || |||||||||||||||||||| | |||||||||| ||||||| |
|
|
| T |
39483505 |
ccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgacatgttctgcaccaccatgattgatgttgccaa |
39483592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 39458360 - 39458286
Alignment:
| Q |
1 |
gtctacactaaatcccttcctatctccgattcactccacatcatcaaccttccagaatgttctcttgccccaaac |
75 |
Q |
| |
|
|||||||||||||||||| | ||| |||||| || |||| || |||||||||||||||||||| |||||||| |
|
|
| T |
39458360 |
gtctacactaaatcccttgccatcgacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaac |
39458286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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