View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_3 (Length: 490)
Name: NF3288_high_3
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 475
Target Start/End: Original strand, 39811937 - 39812403
Alignment:
| Q |
11 |
cagagatgacatagaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaaatatgacctatatggacatgtcgcatac |
110 |
Q |
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| T |
39811937 |
cagagatgacatagaagatatgtcttctgggagtggcaatgttctcacaactgtgttgaaactgattgacaagtatgacctatatggacatgtcgcatac |
39812036 |
T |
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| Q |
111 |
cctaaacatcatagacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagt |
210 |
Q |
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| T |
39812037 |
cctaaacatcatagacaatctgatgtacctgagatatatagatttgctgctaaaacaaaggtatgtagaatatatgtacaaaacacacttcttctgcagt |
39812136 |
T |
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| Q |
211 |
cgtaatgatatagctagctggctaactagtttgatatttttctcagggagtttttataaatcctgctttagtggaaccttttggtcttactttaattgag |
310 |
Q |
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| T |
39812137 |
cgtaatgatatagctagccaactaactagtttgatatttttctcagggagttttcataaatcctgctttagtggaaccttttggtcttactttaattgag |
39812236 |
T |
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| Q |
311 |
gtaagtcttaactaacttaccactttggtgacatattcacattttaatgt--tagtgttattaaatatgtgtttaaactcactcaggcagctgcacatgg |
408 |
Q |
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| T |
39812237 |
gtaagtcttaactaacttaccactttggtgacatattcacattttaatgttatagtgttattaaatatgtgtttaaactcactcaggcagctgcacatgg |
39812336 |
T |
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| Q |
409 |
actgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaattgaaaaattaact |
475 |
Q |
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| T |
39812337 |
actgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaattgaaaaattaact |
39812403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 392 - 461
Target Start/End: Original strand, 15799902 - 15799971
Alignment:
| Q |
392 |
caggcagctgcacatggactgccaatggtggccactaaaaatggtggaccggttgacattaatcgggtaa |
461 |
Q |
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| T |
15799902 |
caggctgcagcacatggccttccaatggtggccactaaaaatggtggacctgtcgacattcatcgggtaa |
15799971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 15799751 - 15799821
Alignment:
| Q |
255 |
agggagtttttataaatcctgctttagtggaaccttttggtcttactttaattgaggtaagtcttaactaa |
325 |
Q |
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| T |
15799751 |
agggtgttttcataaatcctgcactagttgagccttttggtcttactttaattgaggtaggtattaactaa |
15799821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 15799402 - 15799460
Alignment:
| Q |
63 |
gtgttgaaactgattgacaaatatgacctatatggacatgtcgcataccctaaacatca |
121 |
Q |
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| T |
15799402 |
gtgttgaagttgattgataagtatgacctctatggacaagttgcataccctaaacatca |
15799460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 47755436 - 47755368
Alignment:
| Q |
392 |
caggcagctgcacatggactgccaatggtggccactaaaaatggtggaccggttgacattaatcgggta |
460 |
Q |
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| T |
47755436 |
caggcagctgcttatgggttgccaatggttgctactaaaaatggtggtcctgttgatattcatcgggta |
47755368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 47756745 - 47756669
Alignment:
| Q |
73 |
tgattgacaaatatgacctatatggacatgtcgcataccctaaacatcatagacaatctgatgtacctgagatatat |
149 |
Q |
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| T |
47756745 |
tgattgataagtatgacctgtatgggcaagtggcatatcctaaacaccacaaacaatctgatgttcctgaaatatat |
47756669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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