View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288_high_35 (Length: 242)

Name: NF3288_high_35
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288_high_35
NF3288_high_35
[»] chr5 (8 HSPs)
chr5 (18-239)||(25074327-25074548)
chr5 (18-239)||(25132296-25132517)
chr5 (107-239)||(25074907-25075039)
chr5 (107-239)||(25132876-25133008)
chr5 (125-222)||(3136428-3136525)
chr5 (114-239)||(3135967-3136092)
chr5 (160-230)||(38064826-38064896)
chr5 (141-239)||(39148812-39148911)
[»] chr6 (4 HSPs)
chr6 (18-174)||(2039142-2039296)
chr6 (107-239)||(2038640-2038772)
chr6 (166-239)||(2039582-2039655)
chr6 (132-232)||(1018616-1018716)
[»] chr3 (8 HSPs)
chr3 (113-230)||(41639015-41639132)
chr3 (131-232)||(44445541-44445642)
chr3 (137-230)||(1259608-1259701)
chr3 (137-230)||(37242896-37242989)
chr3 (125-241)||(46993363-46993478)
chr3 (149-220)||(38279472-38279543)
chr3 (141-231)||(41041198-41041289)
chr3 (137-230)||(34873018-34873111)
[»] chr8 (11 HSPs)
chr8 (149-239)||(10198269-10198359)
chr8 (149-239)||(38572266-38572356)
chr8 (141-239)||(43433855-43433953)
chr8 (114-232)||(9484316-9484434)
chr8 (114-224)||(10382628-10382738)
chr8 (141-239)||(26579197-26579296)
chr8 (137-224)||(2319320-2319407)
chr8 (114-167)||(9484854-9484907)
chr8 (114-167)||(10382153-10382206)
chr8 (150-230)||(35993-36073)
chr8 (170-230)||(36713-36773)
[»] chr4 (8 HSPs)
chr4 (141-240)||(52533345-52533444)
chr4 (74-230)||(51288820-51288974)
chr4 (114-237)||(51287932-51288055)
chr4 (149-220)||(29975682-29975753)
chr4 (181-239)||(52722057-52722115)
chr4 (114-222)||(52720658-52720766)
chr4 (114-188)||(52721187-52721261)
chr4 (141-239)||(52869491-52869590)
[»] chr7 (4 HSPs)
chr7 (141-239)||(84421-84520)
chr7 (160-232)||(8464438-8464510)
chr7 (151-239)||(46251434-46251522)
chr7 (102-175)||(31235029-31235098)
[»] chr1 (1 HSPs)
chr1 (149-220)||(48620275-48620346)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25074548 - 25074327
Alignment:
Q  18 ttacacccatcgatttaaaccaatggctacaaagaaagcaggagagatggctgaaagaagaaaacaggagaggatccacatcaagtggagtgtttggatg 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  25074548 ttacacccatcgatttaaaccaatggctaaaaagaaagcaggagagatggctcaaagaagaaaacaggagaggatccacatcaagtggtgtgtttggatg 25074449  T
Q  118 ttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  25074448 ttgctgatggtggagaggaaggagagagaatggtggtggaaggtgtaaaagaaataatctagtgttggaagtgtgccatatgattgtgttcttcaattaa 25074349  T
Q  218 tctaatggttaaagttaacttt 239  Q
    ||||||||||||| ||||||||    
T  25074348 tctaatggttaaatttaacttt 25074327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 25132517 - 25132296
Alignment:
Q  18 ttacacccatcgatttaaaccaatggctacaaagaaagcaggagagatggctgaaagaagaaaacaggagaggatccacatcaagtggagtgtttggatg 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||    
T  25132517 ttacacccatcgatttaaaccaatggctaaaaagaaagcaggagagatggctcaaagaagaaaacaggagaggatccacatcaagtggtgtgtttggatg 25132418  T
Q  118 ttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||    
T  25132417 ttgctgatggtggagaggaaggagagagaatggtggtggaaggtgtaaaagaaataatctagtgttggaagtgtgccatatgattgtgttcttcaattaa 25132318  T
Q  218 tctaatggttaaagttaacttt 239  Q
    ||||||||||||| ||||||||    
T  25132317 tctaatggttaaatttaacttt 25132296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 25074907 - 25075039
Alignment:
Q  107 gtgtttggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgt 206  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||    
T  25074907 gtgtttggatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtgtaaaagaaataatctagtgttgaaagtgtaccatatgattgtgt 25075006  T
Q  207 tcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||||| |||||||||||||    
T  25075007 tcttcaattaatctaatggctaaagttaacttt 25075039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 107 - 239
Target Start/End: Original strand, 25132876 - 25133008
Alignment:
Q  107 gtgtttggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgt 206  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||    
T  25132876 gtgtttggatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtgtaaaagaaataatctagtgttgaaagtgtaccatatgattgtgt 25132975  T
Q  207 tcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||||| |||||||||||||    
T  25132976 tcttcaattaatctaatggctaaagttaacttt 25133008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 3136428 - 3136525
Alignment:
Q  125 tggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaa 222  Q
    |||||| |||||||||||||||| |||||||||| ||||||||||||||||  |||||||||||| ||| |||  ||||||||||  |||||||||||    
T  3136428 tggtggggaggaaggagagagaaaggtggtggaaggtgtaaaagaaataattcagtgttggaagtgtatgataaaattgtgttctcaaattaatctaa 3136525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 239
Target Start/End: Complemental strand, 3136092 - 3135967
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaa 213  Q
    ||||||| || |||||| |||||||||||||||| |||||||||| ||||||||||||||||| ||||||  |||| ||| ||| ||| ||||| |  ||    
T  3136092 gatgttggtggtggtggggaggaaggagagagaagggtggtggaaggtgtaaaagaaataatccagtgttacaagtgtatgataagatggtgttttcaaa 3135993  T
Q  214 ttaatctaatggttaaagttaacttt 239  Q
    |||||||| ||| |||| | ||||||    
T  3135992 ttaatctagtggctaaaataaacttt 3135967  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 230
Target Start/End: Original strand, 38064826 - 38064896
Alignment:
Q  160 gtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    |||||||||||||||| ||||||||| ||| ||| ||| ||||||  ||||||||||||||||||| ||||    
T  38064826 gtgtaaaagaaataatatagtgttgggagtgtatgataagattgtactcttcaattaatctaatggctaaa 38064896  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 39148911 - 39148812
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttc-aattaatctaatggttaaagttaacttt 239  Q
    ||||||| ||||||||||  ||||||||||||||| |||||||| |||| ||| ||| ||| ||  ||||| || | |||||||||||||||| ||||||    
T  39148911 gagagaagggtggtggaagatgtaaaagaaataatatagtgttgcaagtgtataataagatcgtactcttcaaaatgatctaatggttaaagtgaacttt 39148812  T

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Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 2039142 - 2039296
Alignment:
Q  18 ttacacccatcgatttaaaccaatggctacaaagaaagcaggagagatggctgaaagaagaaaacaggagaggatccacatcaagtggagtgtttggatg 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  2039142 ttacacccatcgatttaaaccaatggctaaaaagaaagcaggagagatggctgaaagaagaaaacaggagaggatccacatcaagtggtgtgtttggatg 2039241  T
Q  118 ttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataa 174  Q
    |||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||    
T  2039242 ttgctggtggtggagaggaag--gagagaatggtggtggaaggtgtaaaagaaataa 2039296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 2038772 - 2038640
Alignment:
Q  107 gtgtttggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgt 206  Q
    ||||||||||||||||| |||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||| || | || ||||||||||| |    
T  2038772 gtgtttggatgttgctggtggtggggaggaagaagagagaatggtggtggaaggtgtaaaagaaataatctagtattgaaaatgtaccatatgattgtat 2038673  T
Q  207 tcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||||| | |||||||||||    
T  2038672 tcttcaattaatctaatggcttaagttaacttt 2038640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 2039582 - 2039655
Alignment:
Q  166 aagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  2039582 aagaaataatttagtgttggaagtgtaccatatgattgtgttcttcaattaatctaatggttaaagttaacttt 2039655  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 1018716 - 1018616
Alignment:
Q  132 gaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaat-ctaatggttaaa 230  Q
    |||||||||||||||| |||||||||| || | | | ||||||| ||||||||||| | ||| ||| ||||||||||||| |||||| ||||| ||||||    
T  1018716 gaggaaggagagagaagggtggtggaaggtattaga-aaataatatagtgttggaaatgtatgataagattgtgttcttccattaatcctaatagttaaa 1018618  T
Q  231 gt 232  Q
    ||    
T  1018617 gt 1018616  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 41639015 - 41639132
Alignment:
Q  113 ggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttca 212  Q
    |||||||| || |||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| || |||| |||||||||||  |    
T  41639015 ggatgttgatggtggtggggaggaaggagagagaagggtggtggaaggtgtaaaagaaataatctagtgttagaagtgtaccataagattgtgttctcaa 41639114  T
Q  213 attaatctaatggttaaa 230  Q
    ||||||||||||| ||||    
T  41639115 attaatctaatggctaaa 41639132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 232
Target Start/End: Complemental strand, 44445642 - 44445541
Alignment:
Q  131 agaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaat-ctaatggttaa 229  Q
    ||||||||||||||||| |||||||||| |||| | | ||||||| ||||||||||||| ||| ||| ||||||||||||| ||| || |||||||||||    
T  44445642 agaggaaggagagagaagggtggtggaaggtgttaga-aaataatgtagtgttggaagtgtatgataagattgtgttcttccattgatcctaatggttaa 44445544  T
Q  230 agt 232  Q
    |||    
T  44445543 agt 44445541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 1259608 - 1259701
Alignment:
Q  137 aggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||  |||| ||| ||| ||| ||||| |  |||||||||||||| ||||    
T  1259608 aggagagagaagggtggtggaaggtgtaaaagaaataatccagtgttacaagtgtatgataagatggtgttttcaaattaatctaatggctaaa 1259701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 37242896 - 37242989
Alignment:
Q  137 aggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    ||||||||||| |||||||||| ||||||||||||||||| ||||||  |||| ||| ||| ||| ||||| |  |||||||||||||| ||||    
T  37242896 aggagagagaagggtggtggaaggtgtaaaagaaataatccagtgttacaagtgtatgataagatggtgttttcaaattaatctaatggctaaa 37242989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 46993478 - 46993363
Alignment:
Q  125 tggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatg 224  Q
    |||||| ||||||||||||| || |||||||||| |||||||| ||||||| |  |||||||| | ||| ||| ||||||||||    ||||||||||||    
T  46993478 tggtggggaggaaggagagaaaagggtggtggaaggtgtaaaa-aaataatttgatgttggaaatgtatgataagattgtgttcccagattaatctaatg 46993380  T
Q  225 gttaaagttaacttttc 241  Q
    | |||||| ||||||||    
T  46993379 gctaaagtgaacttttc 46993363  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 38279543 - 38279472
Alignment:
Q  149 ggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatct 220  Q
    |||||||||||| ||||||||||||||||| || |||  || ||| |||  |||||||||||||||||||||    
T  38279543 ggtggtggaaagggtaaaagaaataatctaatgctggcggtgtatgataaaattgtgttcttcaattaatct 38279472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 41041198 - 41041289
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttc-aattaatctaatggttaaag 231  Q
    ||||||| ||||||||||  ||||||||||||||| ||||| || |||| ||| ||| ||| ||| ||||| || | |||||||||||||||    
T  41041198 gagagaagggtggtggaagatgtaaaagaaataatatagtgctgcaagtgtatgataagatcgtgctcttcaaaatgatctaatggttaaag 41041289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 34873111 - 34873018
Alignment:
Q  137 aggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    ||||||||||| |||||||| | ||||||||||||||||  ||||||  |||| ||| ||| ||| |||||    |||||||||||||| ||||    
T  34873111 aggagagagaagggtggtgggaggtgtaaaagaaataatacagtgttacaagtgtatgataagatggtgtttccaaattaatctaatggctaaa 34873018  T

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Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 10198359 - 10198269
Alignment:
Q  149 ggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||| ||||||||||||||| ||  ||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  10198359 ggtggtggaaagtgtaatagaaataatctagtgctgacagtgtatgataagattgtgttcttcaattaatctaatggtttaagttaacttt 10198269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 149 - 239
Target Start/End: Complemental strand, 38572356 - 38572266
Alignment:
Q  149 ggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||| ||||||||||||||| ||  ||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||    
T  38572356 ggtggtggaaagtgtaatagaaataatctagtgctgacagtgtatgataagattgtgttcttcaattaatctaatggtttaagttaacttt 38572266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 43433953 - 43433855
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    |||||||| |||||| ||  ||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||| ||||||||| |||||| ||||||    
T  43433953 gagagaatagtggtgaaagatgtaaaagaaataatatagtgttggaagtctatgataagattgtgttcttcaattcatctaatggctaaagtgaacttt 43433855  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 114 - 232
Target Start/End: Complemental strand, 9484434 - 9484316
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaa-gaaataatctagtgttggaagtatatcatatgattgtgttcttca 212  Q
    |||||||||| |||||| |||||||||||||||| |||||| ||| ||| |||| ||||||||||||| ||| |||| ||| |||  | |||||||||||    
T  9484434 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtggaaaaagaaataatctagtattgaaagtgtatgataaaactgtgttcttca 9484336  T
Q  213 attaatctaatggttaaagt 232  Q
     ||||| |||||||||||||    
T  9484335 tttaatttaatggttaaagt 9484316  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 224
Target Start/End: Original strand, 10382628 - 10382738
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtg-taaaagaaataatctagtgttggaagtatatcatatgattgtgttcttca 212  Q
    |||||||||| |||||| |||||||||||||||| |||||| ||| |||  ||||||||||||||| |||||||||| ||  |||  | |||||||||||    
T  10382628 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtgaaaaaagaaataatctaatgttggaagtgtacgataaaactgtgttcttca 10382726  T
Q  213 attaatctaatg 224  Q
     || ||||||||    
T  10382727 tttgatctaatg 10382738  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 26579197 - 26579296
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttc-ttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||| |||||||||  |||| ||||||||||||||||||||||||  ||  |||  |||||| || ||||||||||| |||||||||||| ||||||    
T  26579197 gagagaagggtggtggagtgtgtgaaagaaataatctagtgttggaagggtaggataatattgtgctctttcaattaatcaaatggttaaagtgaacttt 26579296  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 2319407 - 2319320
Alignment:
Q  137 aggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatg 224  Q
    ||||||||||| |||||||| | ||||||||||||||||| ||||||  |||| ||| ||| ||| ||||| |  |||||||||||||    
T  2319407 aggagagagaagggtggtgggaggtgtaaaagaaataatccagtgttacaagtgtatgataagatggtgttttcaaattaatctaatg 2319320  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 9484854 - 9484907
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaa 167  Q
    |||||||||| |||||| ||||||||||||||||  ||||||||| ||||||||    
T  9484854 gatgttgctggtggtggggaggaaggagagagaagagtggtggaaggtgtaaaa 9484907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 10382206 - 10382153
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaa 167  Q
    |||||||||| | |||| ||||||||||||||||  ||||||||| ||||||||    
T  10382206 gatgttgctggtagtggggaggaaggagagagaagagtggtggaaggtgtaaaa 10382153  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 230
Target Start/End: Complemental strand, 36073 - 35993
Alignment:
Q  150 gtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    |||||||||||||||||||| ||||||||| | ||  ||| ||| |||  |||||| |||| |||| ||||||||| ||||    
T  36073 gtggtggaaagtgtaaaagagataatctagcggtgagagtgtatgataatattgtgctctttaattgatctaatggctaaa 35993  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 36713 - 36773
Alignment:
Q  170 aataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    |||||||||||||||| ||| ||| |||  |||||||| ||||||||||| ||||| ||||    
T  36713 aataatctagtgttgggagtgtatgataaaattgtgttattcaattaatccaatggctaaa 36773  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 52533345 - 52533444
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaactttt 240  Q
    |||||||| |||||| ||  ||||||| ||||||| ||||||||||||| ||| ||| ||||||||||||||||| |||||||||||||||| |||||||    
T  52533345 gagagaatagtggtgaaagatgtaaaaaaaataatatagtgttggaagtctatgataagattgtgttcttcaattcatctaatggttaaagtgaactttt 52533444  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 74 - 230
Target Start/End: Original strand, 51288820 - 51288974
Alignment:
Q  74 gaagaaaacaggagaggatccacatcaagtggagtgtttggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaata 173  Q
    |||||||||| |||||||| |||||   || | ||||||| ||||||||| || || ||| |||||||||||||||||||||||| ||||||||||||||    
T  51288820 gaagaaaacatgagaggattcacattcggtagtgtgtttg-atgttgctggtgatg-agaagaaggagagagaatggtggtggaaggtgtaaaagaaata 51288917  T
Q  174 atctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaa 230  Q
    ||||| ||||  || | ||| ||| |||||||||||   ||||||||||||| ||||    
T  51288918 atctaatgttaaaaatgtatgataagattgtgttctcagattaatctaatggctaaa 51288974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 51288055 - 51287932
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaa 213  Q
    |||||||||| |||| |||| ||||||||||||| |||||||||| |||| | | ||||||| |||||||||||| |||| ||| ||||||||||||| |    
T  51288055 gatgttgctggtggtagagaagaaggagagagaagggtggtggaaggtgttaga-aaataatatagtgttggaagaatatgataagattgtgttcttcca 51287957  T
Q  214 ttaat-ctaatggttaaagttaact 237  Q
    || || |||||| ||||||| ||||    
T  51287956 ttgatcctaatgattaaagtgaact 51287932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 220
Target Start/End: Complemental strand, 29975753 - 29975682
Alignment:
Q  149 ggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatct 220  Q
    |||||||||||| ||||||||||||||||| || ||  ||| ||| ||| ||||||||||||||||||||||    
T  29975753 ggtggtggaaagggtaaaagaaataatctaatgctgacagtgtatgataagattgtgttcttcaattaatct 29975682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 52722057 - 52722115
Alignment:
Q  181 gttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||| ||| |||  | ||||||||||||||||||||||||||||||||||||||    
T  52722057 gttggaagtgtatgataaaactgtgttcttcaattaatctaatggttaaagttaacttt 52722115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 222
Target Start/End: Complemental strand, 52720766 - 52720658
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaa 213  Q
    |||||| ||| |||||| ||||||||||||||||  |||| |||| ||||| || ||  ||||||||||| | ||| ||| ||| |||||||||||  ||    
T  52720766 gatgttactggtggtggggaggaaggagagagaagagtgggggaaggtgtataaaaacaaatctagtgttagtagtgtatgataagattgtgttctcaaa 52720667  T
Q  214 ttaatctaa 222  Q
    |||||||||    
T  52720666 ttaatctaa 52720658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 52721187 - 52721261
Alignment:
Q  114 gatgttgctgatggtggagaggaaggagagagaatggtggtggaaagt-gtaaaagaaataatctagtgttggaag 188  Q
    |||||||||| |||||| |||||||||||||||| |||||| ||| || | |||||||||||| ||||||||||||    
T  52721187 gatgttgctg-tggtggggaggaaggagagagaagggtggttgaaggtggaaaaagaaataatttagtgttggaag 52721261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 52869590 - 52869491
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttc-ttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||| ||||||||||  ||||||||||||||| |||||||| |||| ||| ||| ||| ||| || || || | |||||||||||||||| ||||||    
T  52869590 gagagaagggtggtggaagatgtaaaagaaataatatagtgttgcaagtgtatgataagatcgtgctctttaaaatgatctaatggttaaagtgaacttt 52869491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 84520 - 84421
Alignment:
Q  141 gagagaatggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttc-aattaatctaatggttaaagttaacttt 239  Q
    ||||||| ||||||||||  ||||||||||||||| |||||||| |||| ||| ||| ||||||| ||||| || | |||||||||||||||| ||||||    
T  84520 gagagaagggtggtggaagatgtaaaagaaataatatagtgttgcaagtgtatgataagattgtgctcttcaaaatgatctaatggttaaagtgaacttt 84421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Complemental strand, 8464510 - 8464438
Alignment:
Q  160 gtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagt 232  Q
    |||||||||||||||| ||||||||| ||| ||| ||| ||||||  ||||||||||||||||||| ||||||    
T  8464510 gtgtaaaagaaataatatagtgttgggagtgtatgataagattgtactcttcaattaatctaatggctaaagt 8464438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 46251522 - 46251434
Alignment:
Q  151 tggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatctaatggttaaagttaacttt 239  Q
    ||||||||||||||||||| ||||||||||| ||  ||| ||| |||  |||||| |||| |||||||||||||| |||| | ||||||    
T  46251522 tggtggaaagtgtaaaagagataatctagtggtgagagtgtatgataatattgtgctctttaattaatctaatggctaaaatcaacttt 46251434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 31235029 - 31235098
Alignment:
Q  102 gtggagtgtttggatgttgctgatggtggagaggaaggagagagaatggtggtggaaagtgtaaaagaaataat 175  Q
    |||| |||||| ||||||| || ||||||||||||    ||||||| |||||||||| ||||||||||||||||    
T  31235029 gtggtgtgttttgatgttgttggtggtggagagga----gagagaagggtggtggaaggtgtaaaagaaataat 31235098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 48620275 - 48620346
Alignment:
Q  149 ggtggtggaaagtgtaaaagaaataatctagtgttggaagtatatcatatgattgtgttcttcaattaatct 220  Q
    |||||||||||| ||||||||||||||||| || ||| ||| ||| ||| ||||||||||||||||||||||    
T  48620275 ggtggtggaaagggtaaaagaaataatctaatgctggcagtgtatgataagattgtgttcttcaattaatct 48620346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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