View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_high_9 (Length: 454)
Name: NF3288_high_9
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 7329735 - 7330161
Alignment:
| Q |
13 |
aatattctataaatctgatcacaaagcctgatgcatccagttctgattaaaggtcatgtaactaatgaatctgaaatgaatgaaatgagctttggaaact |
112 |
Q |
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| T |
7329735 |
aatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaatgaaatgaactttggaaact |
7329834 |
T |
|
| Q |
113 |
tgagaatgaggaaaactctattatgaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttggcatgttataagatgct |
212 |
Q |
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| T |
7329835 |
tgagaatgaggaaaactctattaggaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttggcatattataagatgct |
7329934 |
T |
|
| Q |
213 |
ataaacttgagaataatgaaacacttcacatcatttactttgtgtttatgttctagnnnnnnnnnnnnncattgatatattgtttaaatgggttcatttt |
312 |
Q |
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| T |
7329935 |
ataaacttgagaatgatgaaacacttcacatcatttactttgtgtttatgttctagttttttcgtttttcatcgatatattgtttaaatgggttcatttt |
7330034 |
T |
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| Q |
313 |
gaattgtagatctacaacctgaacttgagaatgatggagcatggctgcggaatgctatgaagaaaaatattggagcttattggaactacaacttgtttgg |
412 |
Q |
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| T |
7330035 |
gaattgtagatctacaacctgaacttgagaatgatggagcatggctgcggaatgctatgaagaaaaatattggagcttattggaactacaacttgtttgg |
7330134 |
T |
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| Q |
413 |
ttattgtactcattttatagtctattt |
439 |
Q |
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| T |
7330135 |
ttattgtactcattttatagtctattt |
7330161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 142
Target Start/End: Complemental strand, 7310245 - 7310115
Alignment:
| Q |
13 |
aatattctataaatctgatcacaaagcctgatgcatccagttctgattaaaggtcatgtaactaatgaatctg-aaatgaatgaaatgagctttggaaac |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| ||| ||| ||||| |||||||| | | || ||| |||||| |
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| T |
7310245 |
aatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaac |
7310146 |
T |
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| Q |
112 |
ttgagaatgaggaaaactctattatgaaatt |
142 |
Q |
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| T |
7310145 |
ttgagaaaggggaaaactttattatcaaatt |
7310115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 432
Target Start/End: Complemental strand, 7309957 - 7309807
Alignment:
| Q |
290 |
tattgtttaaatgggttcattttgaattgtagatctacaacctgaacttga--------------gaatgatggagcatggctgcggaatgctatgaaga |
375 |
Q |
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| T |
7309957 |
tattgttgaaattggttcattttgaattgtagatctacaacctgagcttcaaacacatcaagcatgaatgatggaacatggcggcagaatgctatgaagc |
7309858 |
T |
|
| Q |
376 |
aaaatattggagcttattggaactacaacttgtttggttattgtactcattttatag |
432 |
Q |
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| T |
7309857 |
aaaatattgcagctttttgg------aacttgtttgtttattgtactaattttatag |
7309807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 7310079 - 7309996
Alignment:
| Q |
158 |
atctgatagttccaagcactacagtttgcaacttgttggcatgttataagatgctataaacttgagaataatgaaacacttcacatcatttact |
251 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||| | |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
7310079 |
atctgattgttccaagcactacattttgtaacttgttggcagg----------ctataatcttgagaataatgaaacacttcacatgatttact |
7309996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 22482321 - 22482274
Alignment:
| Q |
92 |
atgaaatgagctttggaaacttgagaatgaggaaaactctattatgaa |
139 |
Q |
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| T |
22482321 |
atgaaatgagctttggaaagttaagaatcgggaaaactctattatgaa |
22482274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 7300894 - 7300846
Alignment:
| Q |
40 |
ctgatgcatccagttctgattaaaggtcatgtaactaatgaatctgaaa |
88 |
Q |
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| T |
7300894 |
ctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaa |
7300846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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