View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_1 (Length: 709)
Name: NF3288_low_1
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 17 - 699
Target Start/End: Complemental strand, 44142585 - 44141899
Alignment:
| Q |
17 |
aatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaaga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44142585 |
aatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatggttttattagggctataaaga |
44142486 |
T |
|
| Q |
117 |
atttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44142485 |
atttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatggttttattaatttattttcttactacagtttttccataccaaatg |
44142386 |
T |
|
| Q |
217 |
aaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagacataattcaccccatttcctaccttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142385 |
aaactctgagccatgcctttggctatttttgtttaattcttcacagttcactcaccactgatccctcagggagacataattcaccccatttcctaccttt |
44142286 |
T |
|
| Q |
317 |
ttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggttttccttcaca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
44142285 |
ttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggttttccttcaca |
44142186 |
T |
|
| Q |
417 |
ttcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtggaaatgggcgaaagcatggtttgttt |
516 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44142185 |
ttcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtggaaatgggcgaaagcatggtttgttt |
44142086 |
T |
|
| Q |
517 |
tcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44142085 |
tcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaacttatttctgcaaaatgtaatccaaaagttaaatgt |
44141986 |
T |
|
| Q |
617 |
ggttatatagtgcagatcgcattttctc----aacaaaacnnnnnnnncattaatggttgtataagatataacctcaggctcctttg |
699 |
Q |
| |
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|||||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44141985 |
ggttatatagtgcagatcacattttctcaaaaaaaaaaaaaaaaaaaacattaatggttgtataagatataacctcaggctcctttg |
44141899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 44121733 - 44121691
Alignment:
| Q |
21 |
tataagttagtatgaataaacatatgtttggtttcaattttgg |
63 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
44121733 |
tataagttagcatgaataagcatatgtttggttttaattttgg |
44121691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 17 - 460
Target Start/End: Complemental strand, 50063248 - 50062794
Alignment:
| Q |
17 |
aatgtataagttagtatgaataaacatatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaaga |
116 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50063248 |
aatgtataagttagtatgaataagcctatgtttggtttcaattttgggagtcaaaattattttagaacttggatttatggttttattagggctgtaaaga |
50063149 |
T |
|
| Q |
117 |
atttacatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatg |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50063148 |
atttccatagctccactttgttttctgggtgcaaatttcatttactctgaacatagttttattaatttattttcttactacagtttttccataccaaatg |
50063049 |
T |
|
| Q |
217 |
aaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggaga-----------cataattcaccccat |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| || ||||||||||||||| |
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|
| T |
50063048 |
aaactctgagccatgcctttggctatttttgtttaattcttcatagttcactcaccactgatccctcagggtgacgtccacacttcataattcaccccat |
50062949 |
T |
|
| Q |
306 |
ttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgaggagcaaaacatgggt |
405 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50062948 |
ttccaacctttttctccttacccttatcttttatgatttccagctggattgcggacttttatgttttctgcagcttcagtccgaggagcaaaacatgggt |
50062849 |
T |
|
| Q |
406 |
tttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50062848 |
tttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 482 - 699
Target Start/End: Complemental strand, 50062698 - 50062476
Alignment:
| Q |
482 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcatatcttctcaac |
581 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcatatcttctcaac |
50062599 |
T |
|
| Q |
582 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgcagatcgcattttctc-----aacaaaacnnnnnnnncattaatggttgtata |
676 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||| | |||||||||||||| |
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|
| T |
50062598 |
ttatttctgcaaaatgtaatccaaaagttaaatgtggttatatagtgtagatcgcattttctcaaaaaaaaaaaaaaaaaaaaaccttaatggttgtata |
50062499 |
T |
|
| Q |
677 |
agatataacctcaggctcctttg |
699 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
50062498 |
agatataacctcaggctcctttg |
50062476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 50024393 - 50024351
Alignment:
| Q |
21 |
tataagttagtatgaataaacatatgtttggtttcaattttgg |
63 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
50024393 |
tataagttagcatgaataagcatatgtttggttttaattttgg |
50024351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 50031511 - 50031469
Alignment:
| Q |
21 |
tataagttagtatgaataaacatatgtttggtttcaattttgg |
63 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
50031511 |
tataagttagcatgaataagcatatgtttggttttaattttgg |
50031469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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