View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288_low_13 (Length: 422)

Name: NF3288_low_13
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288_low_13
NF3288_low_13
[»] chr6 (4 HSPs)
chr6 (1-396)||(3713759-3714157)
chr6 (80-139)||(17441186-17441245)
chr6 (76-148)||(6999286-6999358)
chr6 (94-153)||(2156013-2156072)
[»] chr4 (2 HSPs)
chr4 (75-152)||(49061697-49061774)
chr4 (76-153)||(51995092-51995169)
[»] chr1 (1 HSPs)
chr1 (76-153)||(30251438-30251515)
[»] chr5 (3 HSPs)
chr5 (55-127)||(9158851-9158923)
chr5 (76-148)||(30660956-30661028)
chr5 (78-153)||(24536021-24536096)
[»] chr8 (2 HSPs)
chr8 (75-153)||(34655049-34655127)
chr8 (76-128)||(43384833-43384885)
[»] chr3 (2 HSPs)
chr3 (78-153)||(18074590-18074665)
chr3 (80-153)||(5418692-5418765)
[»] chr2 (2 HSPs)
chr2 (76-139)||(13829906-13829969)
chr2 (76-139)||(27464621-27464684)


Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 3714157 - 3713759
Alignment:
Q  1 tctttatcattaaacgttttaactacacctcagattggtaagaaatc---tcaacttaaacataatttgagactgagctcgataattaatttgttgaatt 97  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||||   |||||||||||||||||||||||| ||||||||||||||||| || ||||    
T  3714157 tcttaatcattaaacgttttaactacacctcatattggtaaggaatcgagtcaacttaaacataatttgagactcagctcgataattaatttattaaatt 3714058  T
Q  98 tagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaagaaacatatcactctctcaaaatttagttctttactttgtttta 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||    
T  3714057 tagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaataaacttatcactctctcaaaatttagttctttactttgttata 3713958  T
Q  198 ttgttttttgctgctatgttggaaagttgttgttgaacttgtatgaatgtgattgttttgttctataaaaactttgtttgatcctgtttgcgttgttgtt 297  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3713957 ttgttttttgctgctttgttggaaagttattgttgaacttgtatgaatgtgattgttttgttctataaaaactttgtttgatcctgtttgcattgttgtt 3713858  T
Q  298 gtattggaaatttcctgacaaatattactttgttggctaatattacaatggtttttgttcactacttctatatattctaattgtttgttgaatctattt 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3713857 gtattggaaatttcctgacaaatattactttgttggctaatattacaatggtttttgttcactacttctatatattataattgtttgttgaatctattt 3713759  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 139
Target Start/End: Complemental strand, 17441245 - 17441186
Alignment:
Q  80 taattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaa 139  Q
    ||||||||| |||||| ||||||||||||  ||||||||| |||||||||| ||||||||    
T  17441245 taattaattcgttgaacttagttcatgaaccaaatgagttgaacttgagttgaaaattaa 17441186  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 6999358 - 6999286
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaa 148  Q
    ||||||||||||| |||||| || ||| ||||| |||||||| | |||||||| | |||||||| ||||||||    
T  6999358 tcgataattaattcgttgaacttggttaatgaactaaatgagctgaacttgagctgaaaattaagtttgttaa 6999286  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 2156072 - 2156013
Alignment:
Q  94 aatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    |||||||||||||||  |||||||||||||||||  | |||||| | |||||||||||||    
T  2156072 aatttagttcatgaaccaaatgagttaaacttgatctgaaaatttagtttgttaactaaa 2156013  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 49061697 - 49061774
Alignment:
Q  75 ctcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaa 152  Q
    |||||||||||||| |||||||||| ||||||||  |||| |||| || || |||| |||||||| ||||||||||||    
T  49061697 ctcgataattaattcgttgaatttaattcatgaatcaaataagttgaatttaagttgaaaattaaatttgttaactaa 49061774  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 51995169 - 51995092
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    ||||||||||||| |||||| || |||||||||  |||||||   |||||||| | |||||||| |||||||| ||||    
T  51995169 tcgataattaattcgttgaacttggttcatgaaccaaatgagccgaacttgagctcaaaattaagtttgttaaataaa 51995092  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 30251515 - 30251438
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    ||||||||||| | ||||| ||| ||||||||| ||||||| || |||||||| |||||||||| || ||||||||||    
T  30251515 tcgataattaactcgttgagtttggttcatgaactaaatgaattgaacttgagctaaaaattaagttcgttaactaaa 30251438  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Original strand, 9158851 - 9158923
Alignment:
Q  55 aaacataatttgagactgagctcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttga 127  Q
    ||||||| || |||||| | || ||||||||||||||| |||||| |||||||| ||||| ||||||||||||    
T  9158851 aaacatagttggagactaaacttgataattaatttgtttaatttatttcatgaattaaattagttaaacttga 9158923  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 148
Target Start/End: Original strand, 30660956 - 30661028
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaa 148  Q
    ||||||||| |||| ||||| |||||||||||| |||||||| | || || |||| |||||||| ||||||||    
T  30660956 tcgataattgatttattgaacttagttcatgaactaaatgagctgaatttaagttgaaaattaagtttgttaa 30661028  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 24536096 - 24536021
Alignment:
Q  78 gataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    ||||||||||||||||||| | |||||||||  ||||||| |||| ||||| | |||||||| || ||||| ||||    
T  24536096 gataattaatttgttgaatctggttcatgaatcaaatgagctaaatttgagctcaaaattaagttcgttaaataaa 24536021  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 34655127 - 34655049
Alignment:
Q  75 ctcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    |||| |||||| ||||||||| ||||||||||||  ||| ||||  |||||||| |||| ||||| |||||||||||||    
T  34655127 ctcggtaattagtttgttgaacttagttcatgaaccaaacgagtcgaacttgagctaaagattaagtttgttaactaaa 34655049  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 43384885 - 43384833
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgag 128  Q
    ||||||||||||| |||||| || |||||||||  ||||||||| ||||||||    
T  43384885 tcgataattaattcgttgaagttggttcatgaaccaaatgagttgaacttgag 43384833  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 18074665 - 18074590
Alignment:
Q  78 gataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    ||||||||||| |||||||||  |||||||| |||||||||| || ||||  | |||||||| || ||||||||||    
T  18074665 gataattaattcgttgaatttgtttcatgaactaaatgagttgaatttgaactgaaaattaagttcgttaactaaa 18074590  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Complemental strand, 5418765 - 5418692
Alignment:
Q  80 taattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaattttgttaactaaa 153  Q
    |||||| ||||||||| ||||||||||||  ||| ||||  |||||||| |||| ||||| || ||||||||||    
T  5418765 taattagtttgttgaacttagttcatgaaccaaacgagtcgaacttgagctaaagattaagttcgttaactaaa 5418692  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 13829969 - 13829906
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaa 139  Q
    ||||||||| ||| |||||| || |||||| ||  ||||||||| |||||||||||||||||||    
T  13829969 tcgataattgattcgttgaacttggttcataaaccaaatgagttgaacttgagttaaaaattaa 13829906  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 27464621 - 27464684
Alignment:
Q  76 tcgataattaatttgttgaatttagttcatgaagtaaatgagttaaacttgagttaaaaattaa 139  Q
    ||||||||| ||||||||||||| |||||||||  ||||||||  ||||||| || ||||||||    
T  27464621 tcgataattgatttgttgaatttggttcatgaaccaaatgagtcgaacttgaattgaaaattaa 27464684  T

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