View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_14 (Length: 422)
Name: NF3288_low_14
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_14 |
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| [»] scaffold0662 (1 HSPs) |
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| [»] scaffold0702 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: scaffold0662 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: scaffold0662
Description:
Target: scaffold0662; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 2731 - 2326
Alignment:
| Q |
17 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatc |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
2731 |
agtgtccattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatc |
2632 |
T |
|
| Q |
117 |
catgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2631 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
2532 |
T |
|
| Q |
217 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
316 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2531 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
2432 |
T |
|
| Q |
317 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
2431 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaagg |
2332 |
T |
|
| Q |
417 |
taccct |
422 |
Q |
| |
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|||||| |
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| T |
2331 |
taccct |
2326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 378
Target Start/End: Original strand, 5365 - 5726
Alignment:
| Q |
17 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatc |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
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| T |
5365 |
agtgtccattcttccttcaaagatttccatctgttctcaaaagtgtcgcttagcctcttcgccgctttgtgaacatcatccttccaagtgtataataatc |
5464 |
T |
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| Q |
117 |
catgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
216 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5465 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
5564 |
T |
|
| Q |
217 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
316 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5565 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
5664 |
T |
|
| Q |
317 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
378 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5665 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctc |
5726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 2051 - 2456
Alignment:
| Q |
17 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatc |
116 |
Q |
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||||||||||| | |||||| |||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
2051 |
agtgtccattccttcttcaaagattcccatctgttctcaaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatc |
2150 |
T |
|
| Q |
117 |
catgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
216 |
Q |
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|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
2250 |
T |
|
| Q |
217 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
316 |
Q |
| |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
2350 |
T |
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| Q |
317 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
2351 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttattctccactttttttatcaactctgcatcaccatcattcttcaagg |
2450 |
T |
|
| Q |
417 |
taccct |
422 |
Q |
| |
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|||||| |
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| T |
2451 |
taccct |
2456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 422
Target Start/End: Original strand, 35172058 - 35172463
Alignment:
| Q |
17 |
agtgtccattcttccttcaaggatttccatctgttctcaaaagtgtcacttagcctcttggcagctttgtgaacatcatccttccaagggtataataatc |
116 |
Q |
| |
|
||||||||||| | |||||| |||| |||||||||||| |||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||| |
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| T |
35172058 |
agtgtccattccttcttcaaagattcccatctgttctcgaaagtgtcgtgtagcctctttgcagttttgtgaacatcatccttccaagtgtataataatc |
35172157 |
T |
|
| Q |
117 |
catgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172158 |
catgagagaaaacaagtctcacatcatcagcaaattcatcaggtgttgaataaaatcccaacttagcttcaatgtccttcaaacccatatttgccttcaa |
35172257 |
T |
|
| Q |
217 |
ctttggcttgttctctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
316 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35172258 |
ctcgtacttgttttctaaacagtttgacttcgataaaccctccaaaaccttgagatcgagagggtgcttcagagcccacccatctcttccttcaatcatc |
35172357 |
T |
|
| Q |
317 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctcnnnnnnnatcaactctgcatcaccatcattcttcaagg |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
35172358 |
tttttcaatataacccaacattgcattttcttgtaatgctccattggtttcttatgctcctctttttttatcaactctgcattaccatcattcttcaagg |
35172457 |
T |
|
| Q |
417 |
taccct |
422 |
Q |
| |
|
|||||| |
|
|
| T |
35172458 |
taccct |
35172463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 51186145 - 51186059
Alignment:
| Q |
82 |
tttgtgaacatcatccttccaagggtataataatccatgagagaaaacaagtctcatatcatcagcaaattcatcaggtgttgaata |
168 |
Q |
| |
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||||||||| ||||||||||||||||| | ||||||||||| || |||| |||||||| |||||||| ||||| || |||||||| |
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| T |
51186145 |
tttgtgaacctcatccttccaagggtaaagcaatccatgagataatacaaacctcatatcctcagcaaactcatctggagttgaata |
51186059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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