View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_2 (Length: 546)
Name: NF3288_low_2
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_2 |
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| [»] scaffold0204 (3 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 220 - 529
Target Start/End: Complemental strand, 18307 - 18014
Alignment:
| Q |
220 |
tttattccagaataataacctgaaagtgaaggttaatataaaatcaatatgaagaagttttgagagtgaagggattaagacagaacctgaaataccaaca |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18307 |
tttattccagaataataacctgaaagtgaaggtgaatataaaat----------------tgagagtgaagggattaagacagaacctgaaataccaaca |
18224 |
T |
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| Q |
320 |
tcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgacccttcctttatattgctcagctcttcccttatcta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18223 |
tcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgacccttcctttatattgctcagctcttcccttatcta |
18124 |
T |
|
| Q |
420 |
cagtaccaccacccgtaggggaagacccatcttccatttcttttatattacagaaagctgcatgtaagagaaaataatactttatcaaggatgaacatta |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
18123 |
cagtaccaccacccgtaggggaagacccatcttccatttcttttatattacagaaagctgcatgtaagagaaaataatactttatgaaggatgaacatta |
18024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 18508 - 18321
Alignment:
| Q |
6 |
agtgagaagaaagctgggatgttgcatcttagaataaaggaaaaggtctttaagcagttgagagaagtgcagattattgaaaatatgacagacatgaaag |
105 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18508 |
agtgcgaagaaagctgggaagttgcatcttagaataaaggaaaaggtctttaagcagttgagagaagtgcagattattgaaaatatgacagacatgaaag |
18409 |
T |
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| Q |
106 |
aacaatcaagaaaatgagattcaacccatgtgtatttcccttttcagctttcaaacacaaacaacacaagtaagttgaagttttttaac |
194 |
Q |
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| T |
18408 |
aacactcaagaaaatgagattcaacccatgtgtatttcccttttcagctttcaaacacaaacaacacaagt-agttgaagttttttaac |
18321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 384
Target Start/End: Complemental strand, 5431 - 5347
Alignment:
| Q |
300 |
cagaacctgaaataccaacatcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgac |
384 |
Q |
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| T |
5431 |
cagaacctgaaataccaacatcatagccaaatagagaccctccagtggcagcaacaatgcaagcaaggatgacatgaactgtgac |
5347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 220 - 529
Target Start/End: Complemental strand, 48330785 - 48330492
Alignment:
| Q |
220 |
tttattccagaataataacctgaaagtgaaggttaatataaaatcaatatgaagaagttttgagagtgaagggattaagacagaacctgaaataccaaca |
319 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48330785 |
tttattccagaataataacctgaaagtgaaggtgaatataaaat----------------tgagagtgaagggattaagacagaacctgaaataccaaca |
48330702 |
T |
|
| Q |
320 |
tcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgacccttcctttatattgctcagctcttcccttatcta |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330701 |
tcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgacccttcctttatattgctcagctcttcccttatcta |
48330602 |
T |
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| Q |
420 |
cagtaccaccacccgtaggggaagacccatcttccatttcttttatattacagaaagctgcatgtaagagaaaataatactttatcaaggatgaacatta |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48330601 |
cagtaccaccacccgtaggggaagacccatcttccatttcttttatattacagaaagctgcatgtaagagaaaataatactttatgaaggatgaacatta |
48330502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 48330986 - 48330799
Alignment:
| Q |
6 |
agtgagaagaaagctgggatgttgcatcttagaataaaggaaaaggtctttaagcagttgagagaagtgcagattattgaaaatatgacagacatgaaag |
105 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48330986 |
agtgcgaagaaagctgggaagttgcatcttagaataaaggaaaaggtctttaagcagttgagagaagtgcagattattgaaaatatgacagacatgaaag |
48330887 |
T |
|
| Q |
106 |
aacaatcaagaaaatgagattcaacccatgtgtatttcccttttcagctttcaaacacaaacaacacaagtaagttgaagttttttaac |
194 |
Q |
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| T |
48330886 |
aacactcaagaaaatgagattcaacccatgtgtatttcccttttcagctttcaaacacaaacaacacaagt-agttgaagttttttaac |
48330799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 273 - 432
Target Start/End: Complemental strand, 48342616 - 48342455
Alignment:
| Q |
273 |
gaagttttgagagtgaagggattaagacagaacctgaaataccaacatcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataac |
372 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48342616 |
gaagttttgagagtgaagggattaagaca-aacctgaaataccaacgtcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataac |
48342518 |
T |
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| Q |
373 |
atgaacagtgacccttcctttatattgctcagctcttcc---cttatctacagtaccaccacc |
432 |
Q |
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| T |
48342517 |
atgaacagtgacccttcccttatattgctctgcccttccgttcttatccacagtaccaccacc |
48342455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 48342757 - 48342721
Alignment:
| Q |
124 |
attcaacccatgtgtatttcccttttcagctttcaaa |
160 |
Q |
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||||||| ||| ||||||||||||||||||||||||| |
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| T |
48342757 |
attcaactcatatgtatttcccttttcagctttcaaa |
48342721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 302 - 396
Target Start/End: Original strand, 41416468 - 41416562
Alignment:
| Q |
302 |
gaacctgaaataccaacatcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacatgaacagtgacccttcctttata |
396 |
Q |
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||||||||||| |||||||||||||||||||| || || || ||||||||||||||||| ||||||||||||| ||||||||| |||||||| |
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| T |
41416468 |
gaacctgaaattccaacatcatagccaaaaagtgatcctcctgtagcagcaacaatgcatgcaatgataacatagggagtgaccctccctttata |
41416562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 374
Target Start/End: Original strand, 36296816 - 36296889
Alignment:
| Q |
301 |
agaacctgaaataccaacatcatagccaaaaagggacccaccagtagcagcaacaatgcaagcaatgataacat |
374 |
Q |
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|||||||||||| |||||||||||||||||||| || || || ||||| ||||||||||||||||||||||||| |
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| T |
36296816 |
agaacctgaaattccaacatcatagccaaaaagtgatccccctgtagctgcaacaatgcaagcaatgataacat |
36296889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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