View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_20 (Length: 378)
Name: NF3288_low_20
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 180 - 367
Target Start/End: Original strand, 2628398 - 2628585
Alignment:
| Q |
180 |
ttccatatcacccaaattaccacgtgccaaattcggagctaactttttctaacgcttttatttcctccctctaattctaccattgtgcataaatctgatt |
279 |
Q |
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| T |
2628398 |
ttccatatcacccaaattaccacgtgccaaattcggagctaactttttctaacgcttttatttcctccctctaattctaccattgtgcataaatctgatt |
2628497 |
T |
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| Q |
280 |
ggattacctaaatcagtcccgaacaattattcatcccataccagacccccgcaaaagctatctttgtgtatgcataggtatatatttt |
367 |
Q |
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| T |
2628498 |
ggattacctaaatcagtcccgaacaattattcatcccataccagacccctgcaaaagctatctttgtgtatgcataggtatatatttt |
2628585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 2628219 - 2628358
Alignment:
| Q |
21 |
atacataagcatacacagtgaagggttccaacaccattcaaagtaagccatgagtttttgcatagtttactcaggagccatttcagtgaaatcatcttaa |
120 |
Q |
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| T |
2628219 |
atacataagcatacacagtgaagggttccaacactattcaaagtaagacatgagtttttgcgtagtttactcaggagccatttcagtgaaatcatcttaa |
2628318 |
T |
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| Q |
121 |
tctcatccacttcagccgcacagcagttcacattagagaa |
160 |
Q |
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| T |
2628319 |
tctcatccacttcagccgcacagcagttcacattagagaa |
2628358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 2628367 - 2628400
Alignment:
| Q |
195 |
attaccacgtgccaaattcggagctaactttttc |
228 |
Q |
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| T |
2628367 |
attaccacgtgccaaattcggagctaactttttc |
2628400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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