View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_21 (Length: 361)
Name: NF3288_low_21
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 48101776 - 48101429
Alignment:
| Q |
13 |
caaaattcaaatcttatctaacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactatt |
112 |
Q |
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| T |
48101776 |
caaaattcaaatcttatctaacatagacaatgtactaagttagataaaataaattagttatcttttttaataaaaatgtcttgtcaagaattttactatt |
48101677 |
T |
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| Q |
113 |
agtcttgattgcagttcttgtcctctatttttaccggctcacataattgatttttcgcgttttaaatccaattttttgttcctcaattatatttttgaat |
212 |
Q |
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| T |
48101676 |
agtcttgattgcagttgttgtcctctatttttatcagctcacgaaattgatttttcgtgttttaaatccaattctttgttcctcaattatattttttaat |
48101577 |
T |
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| Q |
213 |
caaaaaatgacgtggcaagcttttttattgtcatagtatagaactc--tatattataaatccacttgaatgattccaaatcaagtgttttatgtcaataa |
310 |
Q |
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| T |
48101576 |
caaaaaatgacgtggcaagtttttttattgtcatagtatagaactctgtatattataaatccacttgaatgattccaaatcaagtgttttatgtcaataa |
48101477 |
T |
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| Q |
311 |
aaatttgtcaaatgctccag-attcttagacattgcacaaacttactt |
357 |
Q |
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| T |
48101476 |
aaatttgtcaaatgctccagaattcttagacattgcacaaacttactt |
48101429 |
T |
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