View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_24 (Length: 325)
Name: NF3288_low_24
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 4 - 323
Target Start/End: Original strand, 39275178 - 39275502
Alignment:
| Q |
4 |
catatattccatagcttcagaatgagttacagataacattgatcatatatatgaagcaccatttataatcagggcaacttattaaaatatgaaaacagca |
103 |
Q |
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| T |
39275178 |
catatatttcatagcttcagaatgagttacagataacattgatcatatataggaagcaccatttataatcagggcaaattattaaaatatgaaaacagca |
39275277 |
T |
|
| Q |
104 |
aacaaagcacacaatttattgatactcgat-----ccagaggtagtaacggtaaccaagcaagcatgcgcatattagacccccttgagtgtccaattgac |
198 |
Q |
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| T |
39275278 |
aacaaagcacacaatttattgatactcgatccgatccagaggtagtaacagtaaccaagcaagcatgcgcatgttagacccccttgagtgtccaattgac |
39275377 |
T |
|
| Q |
199 |
tttgtgacttccatgaccatgaccataaccatgaggcttaatcctgttgttattattgtatccatatggattagcatagtgaacatctcctccatatgtt |
298 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39275378 |
tttgtgacttccatgaccatgaccatgaccatgaggcttaatcctgttgttattattgtatccatatggattagcatagtgaacatctcctccatatgtt |
39275477 |
T |
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| Q |
299 |
ccatgacgctcatatctcatctcat |
323 |
Q |
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||||||||||||||||||||||||| |
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| T |
39275478 |
ccatgacgctcatatctcatctcat |
39275502 |
T |
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