View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_3 (Length: 527)
Name: NF3288_low_3
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 62 - 512
Target Start/End: Original strand, 6452571 - 6453040
Alignment:
| Q |
62 |
agatagacataattgaagtggttggttgcaaaacatataaaagaatgatagtcatggtcaaagtaaataatgca-------------------ttaaaca |
142 |
Q |
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| T |
6452571 |
agatagacataattgaagtggttggttgcaaaacatataaaagaatgatagtcatggtcaaagtaaataatgcaactatagctatggtatgcattaaaca |
6452670 |
T |
|
| Q |
143 |
ttggtattggtatcccatatagctatagttaacaggagttaaccaatgaggtatgatgccacatatgcatnnnnnnnccaaatgtgaggtatagactata |
242 |
Q |
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| T |
6452671 |
ttggtattggtatcccatatagctatagttaacaggagttaaccaatgaggtatgatgccacatatgcatgggggggccaaatgtgaggtatagactata |
6452770 |
T |
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| Q |
243 |
gaagaggaggatattttggcctgccagtcaatcctcgttcataataaaaacgggaatattccaattggagaaatatgtattaaaggagaaaaataaatta |
342 |
Q |
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| T |
6452771 |
gaagaggaggatattttggcctgccagtcaatcctcgttcataataaaaacgggaatattccaattggagaaatatgtattaaaggagaaaaataaatta |
6452870 |
T |
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| Q |
343 |
aacttatcatgatagtagaaacaaaaagagcagggaattttaataggtcacaatccatcaacaacgtgaactatactatagactcatttcccgttccaat |
442 |
Q |
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| T |
6452871 |
aacttatcatgatagtagaaacaaaaagagcagggaattttaataggtcacaatccatcaacaacgtgaactatactatagactcatttcccgttccaat |
6452970 |
T |
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| Q |
443 |
attccattgaatagtacccattttggcttttctccaattccaaccatataccttgccagtaaccaccatt |
512 |
Q |
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| T |
6452971 |
attccattgaatagtacccattttggcttttctccaattccaaccatataccttgccagtaaccaccatt |
6453040 |
T |
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