View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288_low_30 (Length: 260)

Name: NF3288_low_30
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288_low_30
NF3288_low_30
[»] chr1 (5 HSPs)
chr1 (1-119)||(14665378-14665496)
chr1 (131-210)||(14653014-14653093)
chr1 (131-210)||(14662805-14662884)
chr1 (200-241)||(14665337-14665378)
chr1 (146-191)||(14687940-14687985)


Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 14665496 - 14665378
Alignment:
Q  1 agatttggtataatgtagagacatctgctactgtgtctgcatgtgctctcaaacagtaaggcgtcaaaggactgctgcaacactgggcagaagttcgaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14665496 agatttggtataatgtagagacatctgctactgtgtctgcatgtgctctcaaacagtaaggcgtcaaaggactgctgcaacactgggcagaagttcgcag 14665397  T
Q  101 cagcaagttaaccccaatt 119  Q
    |||||||||||||||||||    
T  14665396 cagcaagttaaccccaatt 14665378  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 14653093 - 14653014
Alignment:
Q  131 aaaacctcatctaggacgctacaaatgcaatatggatgcagcctcttcgaagcttcacaaccaggttggtattgacatat 210  Q
    ||||||||||||||||||||||||||||||| || |||||||||  | | ||||||||||| ||||||||| ||||||||    
T  14653093 aaaacctcatctaggacgctacaaatgcaatgtgtatgcagccttattggagcttcacaacaaggttggtactgacatat 14653014  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 210
Target Start/End: Complemental strand, 14662884 - 14662805
Alignment:
Q  131 aaaacctcatctaggacgctacaaatgcaatatggatgcagcctcttcgaagcttcacaaccaggttggtattgacatat 210  Q
    ||||||||||||||||||||||||||||||| || |||||||||  | | ||||||||||| ||||||||| ||||||||    
T  14662884 aaaacctcatctaggacgctacaaatgcaatgtgtatgcagccttattggagcttcacaacaaggttggtactgacatat 14662805  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 14665378 - 14665337
Alignment:
Q  200 tattgacatataaaagattttgcagcttgagaatgtggattc 241  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14665378 tattgacatataaaagattttgcagcttgagaatgtggattc 14665337  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 14687940 - 14687985
Alignment:
Q  146 acgctacaaatgcaatatggatgcagcctcttcgaagcttcacaac 191  Q
    |||||||||||||||| || ||||||||| |||| |||||||||||    
T  14687940 acgctacaaatgcaatgtgaatgcagccttttcggagcttcacaac 14687985  T

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