View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_31 (Length: 255)
Name: NF3288_low_31
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 29651544 - 29651381
Alignment:
| Q |
1 |
aatttcaaacgcaactatcggtgcctctctcaca--cacaaacagaacccatgttcaacatcatgtcgccgccttcaagttctgtttccattttcctttt |
98 |
Q |
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| T |
29651544 |
aatttcaaacccaactatcggtgcctctctcacagacacaaacagaacccatgttcaacatcatgtcgccgccttcaagttctgtttccattttcctttt |
29651445 |
T |
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| Q |
99 |
tgttctgctaaataggttttttgttcgtttgcttctattgcaggattgagaagaatgaaaccaa |
162 |
Q |
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| T |
29651444 |
tgttctgctaaataggttttttgttcgtttgcttctattgcaggattgagaagaatgaaaccaa |
29651381 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 29650414 - 29650322
Alignment:
| Q |
154 |
tgaaaccaatgagtggccatgaagttgatggtaagtaagtttagttctgtttatagactgttatttagttatgta---tttaaaggttgctat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
29650414 |
tgaaaccaatgagtggccatgaagttgatggtaagtaagtttagttctgtttatagactgttattgagttatgtattttttaaaggttgctat |
29650322 |
T |
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