View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_34 (Length: 250)
Name: NF3288_low_34
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 48101407 - 48101168
Alignment:
| Q |
1 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
100 |
Q |
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| T |
48101407 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
48101308 |
T |
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| Q |
101 |
aatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48101307 |
aatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
48101208 |
T |
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| Q |
201 |
tgaagaaaggaatgatatatactttttctggtaacctatg |
240 |
Q |
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| T |
48101207 |
tgaagaaaggaatgatatatactttttctggtaacctatg |
48101168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 48064154 - 48063920
Alignment:
| Q |
1 |
aaagcagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttgga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||| |||||||||| |
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| T |
48064154 |
aaagcagtgtgtgacagaacctaagagggcacaatatggaggaggcattatagtaaatccaggatttgatcacaacataaagggttggagagtgtttgga |
48064055 |
T |
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| Q |
101 |
aatggaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaac |
200 |
Q |
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| T |
48064054 |
aatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatggtttctcacagaaggtccaac |
48063955 |
T |
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| Q |
201 |
tgaagaaaggaatgatatatactttttctggtaac |
235 |
Q |
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| T |
48063954 |
tgaagaaaggaatgatatacatgttttctggtaac |
48063920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 240
Target Start/End: Complemental strand, 48068806 - 48068571
Alignment:
| Q |
5 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatg |
104 |
Q |
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|||||||| |||||||| |||| ||||||||||| || ||||||| ||||||||||||||||||||||||||| || | |||| ||||||| ||| |
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| T |
48068806 |
cagtgtgtcccagaacctcagagagcacaatatggaggtggcattatagtaaatccaggatttgatcacaacattaaggattggacggtgtttgagcatg |
48068707 |
T |
|
| Q |
105 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
204 |
Q |
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| T |
48068706 |
gaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaactgga |
48068607 |
T |
|
| Q |
205 |
gaaaggaatgatatatactttttctggtaacctatg |
240 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||| |
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| T |
48068606 |
gaaagaaatgatatatattttttctggtaacctatg |
48068571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 48107819 - 48107589
Alignment:
| Q |
5 |
cagtgtgtgacagaacctaagagggcacaatatgggggaggcattacagtaaatccaggatttgatcacaacataaatggctggaaagtgtttggaaatg |
104 |
Q |
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|||||| ||| ||||||| | || ||||||||||| || || |||| ||||||| | |||||||||||||||||| | || |||| ||| |||||||||| |
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| T |
48107819 |
cagtgtatgaaagaacctcaaagagcacaatatggagggggaattatagtaaattccggatttgatcacaacatagagggttggacagtatttggaaatg |
48107720 |
T |
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| Q |
105 |
gaacaatcgaggaacgagtatcaaacaatggaaatagattcattgttgccagcaacagaacacaaccattggatagtttttcacagaaggtccaactgaa |
204 |
Q |
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||||||| |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| | ||| || || | |
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| T |
48107719 |
gaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagctaga |
48107620 |
T |
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| Q |
205 |
gaaaggaatgatatatactttttctggtaac |
235 |
Q |
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||||||| |||||||||||||||| |||||| |
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| T |
48107619 |
gaaaggattgatatatactttttcaggtaac |
48107589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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