View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_36 (Length: 244)
Name: NF3288_low_36
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38160663 - 38160893
Alignment:
| Q |
1 |
aaaacaatgcttaaggagctttgcaatgaatttgaagagaaactgattatgtgagatatgaagttaccattgaatattcaaagctgaaatcatctttcac |
100 |
Q |
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| T |
38160663 |
aaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgcgagttatgaagttaccattgaacattcaaagctgaaactatctttcac |
38160762 |
T |
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| Q |
101 |
tttgaatattgttagtttttgaattttcgt--tgtgattctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaat |
198 |
Q |
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| T |
38160763 |
ttttaatattgttagtttttgactttttgtggtgttattcttttaactttccaatatgcaggattcacaaggagcaggtcgaaaaatggcaggaagaaat |
38160862 |
T |
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| Q |
199 |
caaagaattgcgtgcacttgatgcctcaaat |
229 |
Q |
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| T |
38160863 |
caaagaactgcgtgcacttgatgcctcaaat |
38160893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38116838 - 38117067
Alignment:
| Q |
1 |
aaaacaatgcttaaggagctttgcaatgaatttgaagagaaactgattatgtgagatatgaagttaccattgaatattcaaagctgaaatcatctttcac |
100 |
Q |
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||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| | | ||| ||||||||| |
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| T |
38116838 |
aaaacaatgtttaaggagctatgcaatgaatttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcac |
38116937 |
T |
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| Q |
101 |
tttgaatattgttagtttttgaattttcgt--tgtgattctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaat |
198 |
Q |
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| T |
38116938 |
tta-aatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaat |
38117036 |
T |
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| Q |
199 |
caaagaattgcgtgcacttgatgcctcaaat |
229 |
Q |
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| T |
38117037 |
caaagaactccgtgcactcgatgcctcaaat |
38117067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 49004640 - 49004870
Alignment:
| Q |
1 |
aaaacaatgcttaaggagctttgcaatgaatttgaagagaaactgattatgtgagatatgaagttaccattgaatattcaaagctgaaatcatctttcac |
100 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | ||| ||||||||| |
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| T |
49004640 |
aaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatgaagttaccattgaacattcaatgtttaaactatctttcac |
49004739 |
T |
|
| Q |
101 |
tttgaatattgttagtttttgaatttt--cgttgtgattctttgaactttgaaatatgcaggattcacaaggagcaggtcgaaaagtggcaggaagaaat |
198 |
Q |
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||| |||||||||||||||||| |||| | ||||||||||| |||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
49004740 |
tttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaat |
49004839 |
T |
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| Q |
199 |
caaagaattgcgtgcacttgatgcctcaaat |
229 |
Q |
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||||||| | || ||||| |||||||||||| |
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| T |
49004840 |
caaagaactccgagcactcgatgcctcaaat |
49004870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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