View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_37 (Length: 243)
Name: NF3288_low_37
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 32156900 - 32157134
Alignment:
| Q |
1 |
gggtatttgtcacgttcttatcaacaggaataaaatttgttggctaaattatgactgtagttaaatatatctaagctagattcatgtagggttgaattat |
100 |
Q |
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| T |
32156900 |
gggtatttgtcacgttcttatcaacaggaataaaatttgttggctaaattatgactgtagttaaatatatctaagctagattcatgtagggttgaattat |
32156999 |
T |
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| Q |
101 |
ttttaatatcttgtagttttatgcatctgtgtgacattttagtatgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcatt |
200 |
Q |
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| T |
32157000 |
ttttaatatcttctagttttatgcatctgtgtgacattttagtacgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcatt |
32157099 |
T |
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| Q |
201 |
gtctccattatcaacagcttctttctcttcatctc |
235 |
Q |
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| T |
32157100 |
gtctccattatcaacagcttctttctcttcttctc |
32157134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 32182750 - 32182850
Alignment:
| Q |
132 |
tgacattttagtatgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcattgtctccattatcaacagcttctttctcttca |
231 |
Q |
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| T |
32182750 |
tgacattttagtatgaatgaaactcaaatattaatggtatatttgaagaaaaatatatacctt---attgtctccattattaacaacttctttctcttct |
32182846 |
T |
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| Q |
232 |
tctc |
235 |
Q |
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|||| |
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| T |
32182847 |
tctc |
32182850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 32174715 - 32174791
Alignment:
| Q |
136 |
attttagtatgaatgaaactcaaagattaatgatatatttgaagaaaaatatacaccttatcattgtctccattatcaac |
215 |
Q |
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| T |
32174715 |
attttagtatgaatgaaacccaaagattaatgatatatttgaagaaaaatatatacctt---attgtatccattatcaac |
32174791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 32119073 - 32119113
Alignment:
| Q |
137 |
ttttagtatgaatgaaactcaaagattaatgatatatttga |
177 |
Q |
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| T |
32119073 |
ttttagtatgaatgaaactcaaagatgaatgatatatttga |
32119113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 32174612 - 32174666
Alignment:
| Q |
34 |
aatttgttggctaaattatgactgtagttaaatatatctaagctagattcatgta |
88 |
Q |
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| T |
32174612 |
aatttcttggctaaattatgactatagttaaatgtatctacactagaatcatgta |
32174666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 32119005 - 32119077
Alignment:
| Q |
44 |
ctaaattatgactgtagttaaatatatctaagctagattcatgtagggttgaattatttttaatatcttgtagtttta |
121 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||||||||||| ||| | |||||||| || ||||| |
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| T |
32119005 |
ctaaattatgactgttgttaaatat-----aactagattcatgtagggttgaataattctaaatatcttctactttta |
32119077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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