View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_40 (Length: 235)
Name: NF3288_low_40
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 32110437 - 32110649
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32110437 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagtctgt |
32110536 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattgaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | |
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| T |
32110537 |
ctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcatctgttgaaa |
32110636 |
T |
|
| Q |
215 |
aattatgaacaaa |
227 |
Q |
| |
|
|| ||| |||||| |
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|
| T |
32110637 |
aagtatcaacaaa |
32110649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 32156621 - 32156841
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| || | |
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|
| T |
32156621 |
tagttaataatcaatttcttaaaagcagaaaagttgcaatatgacaagtgaatctgcttgtctattctaccaggccttaatagagcaggatcaagccttt |
32156720 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattgaca |
214 |
Q |
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|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32156721 |
ctttgtgatttgttgtgaaaacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttgaca |
32156820 |
T |
|
| Q |
215 |
aattatgaacaaatgttaggt |
235 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
32156821 |
aattatgaacaaatgttaggt |
32156841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 32174397 - 32174596
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||| |
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| T |
32174397 |
tagttgacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgtttgtccattctaccaggccttaacagagcaggatcaagcctgt |
32174496 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattgaca |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
32174497 |
ctttgtgatttgttgtgaatacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctgttgaca |
32174596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 15 - 212
Target Start/End: Complemental strand, 32207023 - 32206826
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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|
| T |
32207023 |
tagttaacaaccaattgcttcaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggtcttagcagagcaggatcaagcttgt |
32206924 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattga |
212 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
32206923 |
ctttgtgatttgttgtgaatacaattatgtgttcttctccacagcatgaccaaagaccatctactgcattcaacagtcctgaaagtgtcacctgttga |
32206826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 32182483 - 32182682
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || | |
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|
| T |
32182483 |
tagttaacaaccaattgcttaaaaccagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttagcagagcaggatcaagccttt |
32182582 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattgaca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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|
| T |
32182583 |
ctttgtgatttgttgtgaaaacaattatgtgttcctctccacaacatgaccaaagaccatctgtcgcattcaatagtcctgaaagtgtcacctgttgaca |
32182682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 32212098 - 32211909
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| || | |
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|
| T |
32212098 |
tagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagccttt |
32211999 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtca |
204 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32211998 |
ctttgtgatttgttgtgacaacaattatgtgttcttctccacagcacgaccaaagaccatctactgcattcaatagtcccgaaagtgtca |
32211909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 32118701 - 32118901
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgt |
114 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||| |||||||||||||| |||| |
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|
| T |
32118701 |
tagttaataaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatgtgcttgtccattctaccaggtcttaatagagcaggatcaagcctgt |
32118800 |
T |
|
| Q |
115 |
ctttgtgatttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtcacctattgaca |
214 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |
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|
| T |
32118801 |
ctttgtgatttgttgtgaatacaattatgtgttcttctccgcagcatgaccaaagaccatcaacagcattcaatagtcctgaaagtgtcacctgttgaca |
32118900 |
T |
|
| Q |
215 |
a |
215 |
Q |
| |
|
| |
|
|
| T |
32118901 |
a |
32118901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 204
Target Start/End: Original strand, 32157739 - 32157920
Alignment:
| Q |
23 |
aaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatcaagtctgtctttgtga |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
32157739 |
aaccaatttcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtccattctaccaggccttaatagagcaggatcaagcctgtctttgtga |
32157838 |
T |
|
| Q |
123 |
tttgttgtgaaaacaattatgcgttcttcgccacagcatgaccaaagaccatctactgcattcaatagtcctgaaagtgtca |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
32157839 |
tttgttgtgaaaacaattatgtgttcttctccacagcacgaccagagaccatctgtcgcattcaatagtcccgaaagtgtca |
32157920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 32152548 - 32152639
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtctattctaccaggccttagcagagcaggatc |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| |
|
|
| T |
32152548 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaaatgaatttgcttgtccattttaccaggccttaacagagcatgatc |
32152639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 2821219 - 2821158
Alignment:
| Q |
15 |
tagttaacaaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtc |
76 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2821219 |
tagttaataaccaattgcttaaaagcagaaaagttgcaatatgacaagtgaatttgcttgtc |
2821158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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