View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_5 (Length: 481)
Name: NF3288_low_5
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 346
Target Start/End: Original strand, 42082876 - 42083186
Alignment:
| Q |
14 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgag |
113 |
Q |
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| T |
42082876 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgag |
42082975 |
T |
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| Q |
114 |
ataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtac |
213 |
Q |
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| T |
42082976 |
ataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc--------- |
42083066 |
T |
|
| Q |
214 |
taatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataa |
313 |
Q |
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| T |
42083067 |
-------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataa |
42083153 |
T |
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| Q |
314 |
taatttgaaaaatggaagaaattgaatgtaact |
346 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
42083154 |
taatttgaaaaatggaagaaattgaatgtaact |
42083186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
| Q |
9 |
agtagcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt |
108 |
Q |
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| T |
42086356 |
agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg |
42086452 |
T |
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| Q |
109 |
tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg |
208 |
Q |
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| T |
42086453 |
ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga |
42086552 |
T |
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| Q |
209 |
ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
273 |
Q |
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| T |
42086553 |
ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 346
Target Start/End: Original strand, 42086665 - 42086713
Alignment:
| Q |
298 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaact |
346 |
Q |
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| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaact |
42086713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 6e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 321 - 465
Target Start/End: Original strand, 45360861 - 45361005
Alignment:
| Q |
321 |
aaaaatggaagaaattgaatgtaacttccaacacaagtagttagattcaaattcaatcaaaataaaatatggtcaagaaagcatggatgcctaggtttta |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45360861 |
aaaaatggaagaaattgaatgtaacttccaacacaagtagttagattcaaattcatacaaaataaaatatggtcaagaaagcatggatgcctaggtttta |
45360960 |
T |
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| Q |
421 |
atggcaaagagaatatgatttgacagaaaatgtagtgtttgatat |
465 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45360961 |
atggaaaagagaatatgatttgacagaaaatgtagtgtttgatat |
45361005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 6933139 - 6933193
Alignment:
| Q |
292 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaact |
346 |
Q |
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||||| |||| |||| ||||| || ||||||||||||||||||||||| |||||| |
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| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaact |
6933193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 344
Target Start/End: Original strand, 37603915 - 37603956
Alignment:
| Q |
303 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaa |
344 |
Q |
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| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaa |
37603956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 346
Target Start/End: Complemental strand, 22284533 - 22284496
Alignment:
| Q |
309 |
gataataatttgaaaaatggaagaaattgaatgtaact |
346 |
Q |
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|||||||||||||||||||||| || |||||||||||| |
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| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaact |
22284496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
309 |
gataataatttgaaaaatggaagaaattgaatgtaac |
345 |
Q |
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||||||| ||||||||||||||| ||||||||||||| |
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| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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