View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_6 (Length: 468)
Name: NF3288_low_6
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 458
Target Start/End: Complemental strand, 40614447 - 40614021
Alignment:
| Q |
17 |
accctcaaacccaaccgaaatagggataataaatctaatttaata---caagcaaatcaaataccatcaaacctaagtaccccaagaaagcaacgtatgc |
113 |
Q |
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| T |
40614447 |
accctcaaacccaaccgaaatagggataataaatctaatttaatagtacaagcaaatcaaataccatcaaacctaagtaccccaagaaagcaacgtatgc |
40614348 |
T |
|
| Q |
114 |
tctcaattaaagactgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggctcatcacctcaacctataaacaacacttaaatta |
213 |
Q |
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| T |
40614347 |
tctcaattaaagactgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggttcatcacctcaacct--------------aatta |
40614262 |
T |
|
| Q |
214 |
gaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgaaatatattaatgctaaa |
313 |
Q |
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| T |
40614261 |
gaagttagaatgcgactcctcttatcaatatttccagcatcaatcatgcaagaaataattttttt-----aagggtaaaatgaaatatattaatgctaaa |
40614167 |
T |
|
| Q |
314 |
tctca-tctctacagcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaa |
412 |
Q |
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| T |
40614166 |
tctcactctctaccgcacaaggtgtatcgagaaagaggataaaaaaattatataattttgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaa |
40614067 |
T |
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| Q |
413 |
atcagcatatgcccacatacatcaaaggattaagccatcacctatg |
458 |
Q |
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| T |
40614066 |
atcagcatatgcccacatacattaaaggattaagccaccacctatg |
40614021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 128 - 458
Target Start/End: Complemental strand, 40617650 - 40617334
Alignment:
| Q |
128 |
tgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggctcatcacctcaacctataaacaacacttaaattagaagttagaatgcg |
227 |
Q |
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| T |
40617650 |
tgagcacatggagatgcatttattttggacctgatgtaactaaaaattgggttcatcacctcaacct--------------aattagaagttagaatgcg |
40617565 |
T |
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| Q |
228 |
actcctcttatcaatatttccagcatcaatcatgcaagaaagaannnnnnnngaagaagggtaaaatgaaatatattaatgctaaatctca-tctctaca |
326 |
Q |
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| T |
40617564 |
actcctctcatcaatatttccagcatcaatcatgcaagaaag-attttttttgaagaagggtaaaatgaaatacattactgctaaatcgcactctctcca |
40617466 |
T |
|
| Q |
327 |
gcacaaggtgtatcgagaaagaggatnnnnnnnttatataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgccc |
426 |
Q |
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| T |
40617465 |
atataaggtgtactgaagaagaggttaaaaaagttatataattgtgttacaaaacccgcaagagcaaaaccaaggagtgaaacaaaatcaacatatgccc |
40617366 |
T |
|
| Q |
427 |
acatacatcaaaggattaagccatcacctatg |
458 |
Q |
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| T |
40617365 |
acacacaacaaaaggttaagccaccatctatg |
40617334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 40610487 - 40610375
Alignment:
| Q |
17 |
accctcaaacccaaccgaaatagggataataaatctaatttaatacaagcaaatcaaataccatca---aacctaagtaccccaagaaagcaacgtatgc |
113 |
Q |
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|||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| || || |
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| T |
40610487 |
accctcaaacccaaccgaaacagggataataaatctaat-----acaagaaaatcaaataccatcatcaaacctaagtaccccaagaaagcaacttaagc |
40610393 |
T |
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| Q |
114 |
tctcaattaaagactgag |
131 |
Q |
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| T |
40610392 |
tctcaattaaagactgag |
40610375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 364 - 458
Target Start/End: Complemental strand, 12243807 - 12243713
Alignment:
| Q |
364 |
ataattgtgttacaaaaaccgcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaaggattaagccatcacctatg |
458 |
Q |
| |
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|||| |||||| |||||||||||||| ||||||||||||| |||||||| ||||| |||||||||| ||| ||| | |||||||| | |||||| |
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| T |
12243807 |
ataaatgtgtttcaaaaaccgcaagaacaaaaccaaggaaagaaacaaagtcagcctatgcccacacacaacaaggagttaagccaccgcctatg |
12243713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 440
Target Start/End: Original strand, 41238349 - 41238405
Alignment:
| Q |
384 |
gcaagagcaaaaccaaggaacgaaacaaaatcagcatatgcccacatacatcaaagg |
440 |
Q |
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| T |
41238349 |
gcaagaacaaaaccaaggaaagaaacaaaatcagtctatgcccgtacacatcaaagg |
41238405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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