View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_7 (Length: 460)
Name: NF3288_low_7
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_7 |
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| [»] scaffold0018 (2 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Complemental strand, 192802 - 192371
Alignment:
| Q |
18 |
aaacaaaggtgaagatagaagaaaatggcttcatggaattcagtttcattagaagtaacctacgaagttcttggttggttcgcttttattgtttggtcca |
117 |
Q |
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| T |
192802 |
aaacaaaggtgaagatagaagaaaatggcttcatggaattcagtttcattagaagtaacctacgaagttcttggttggttcgcttttattgtttggtcca |
192703 |
T |
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| Q |
118 |
tcagtttctaccctcaagtcatcttaaatttccgcaggaaaaggtttctattctttcttcttctattgttttcattatgtctaatccgtttgattaattt |
217 |
Q |
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| T |
192702 |
tcagtttctaccctcaagtcatcttaaatttccgcaggaaaaggtttctattctttcttcttctattgttttcattatgtctaatccgtttgattaattt |
192603 |
T |
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| Q |
218 |
aaccctcaatttttattttgaaattttcagcgttgttggactcaactttgatttcgtgctgttaaatttaaccaagcacagttcatatcttatatacaat |
317 |
Q |
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| T |
192602 |
aaccctcaatttttattttgaaattttcagcgttgttggactcaactttgatttcgtgctgttaaatttaaccaagcacagttcatatcttatatacaat |
192503 |
T |
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| Q |
318 |
gcttctctttactttagctctgctattcagaaacaatattttcagaaatacggttatgatcaggtaagctttcttctcttactaatagtaactttaatat |
417 |
Q |
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| T |
192502 |
tcttctctttactttagctctgctattcagaaacaatattttcagaaatacggttatgatcaggtaagctttcttctcttactaatagtaactttaatat |
192403 |
T |
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| Q |
418 |
gttatttatgttgtttatgctagattcttcat |
449 |
Q |
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| T |
192402 |
gttatttatgttgtttatgctagattcttcat |
192371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 356
Target Start/End: Original strand, 183189 - 183284
Alignment:
| Q |
261 |
aactttgatttcgtgctgttaaatttaaccaagcacagttcatatcttatatacaatgcttctctttactttagctctgctattcagaaacaatat |
356 |
Q |
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| T |
183189 |
aactttgatttcgtgttgctgaatttgacaaagcatacatcatatcttatatacaatacatctttgtactttagctctacaattcaacaacaatat |
183284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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