View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3288_low_8 (Length: 456)
Name: NF3288_low_8
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3288_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 10385872 - 10386234
Alignment:
| Q |
18 |
aagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgtactttcaattttattcaagtatagagtcagaaagagtaaaata |
117 |
Q |
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| T |
10385872 |
aagtaaaggtttttcatctttactggggaagaactggtaatctatctaaacatttgtactttcaattttattcaagtatagagtcagaaagagtaaaata |
10385971 |
T |
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| Q |
118 |
tgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaagagagagtacactgacaataggaaataatagtatgtgttttgaa |
217 |
Q |
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| T |
10385972 |
tgcaagcagagtaggtaattccaccaaatcacaacttatttaagcttactgtaaaagagagagtacattgacaataggaaataatagtatgtgttttgaa |
10386071 |
T |
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| Q |
218 |
aactttgaannnnnnnattgtcgtcttcccttatctactttagaaacagataacaacacaatttaaccacaaaaaacacttggcgcaatttcgttcagtg |
317 |
Q |
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| T |
10386072 |
aactttgaatttttttactgtcgtcttcccttatctactttagaaacaaataacaacacaatttaaccaaaaaaaacacttggcgcaatttcgttcagtg |
10386171 |
T |
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| Q |
318 |
catttaatc-aaacatagtt-nnnnnnnctaagtttacttaaaatcaaacatagtttcaaata |
378 |
Q |
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| T |
10386172 |
catttaatcaaaacatagttaaaaaaaactaagtttacttaaaatcaaacatagtttcaaata |
10386234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 288 - 451
Target Start/End: Original strand, 10386238 - 10386394
Alignment:
| Q |
288 |
aaaaaacacttggcgcaatttcgttcagtgcatttaatcaaacatagttnnnnnnn--ctaagtttacttaaaatcaaacatagtttcaaatatggttgt |
385 |
Q |
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| T |
10386238 |
aaaaaacccttggcgcaatttcattcagtgcatttaatcaaacataattaaaaaaaaactaagtttacttaaaatcaaacatagtttcaaatatggttgt |
10386337 |
T |
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| Q |
386 |
agaaatttttaatcaaatggcgtttcatattgactgtgaagtttggggttgagttttatacctatg |
451 |
Q |
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| T |
10386338 |
agaaatttttaatca--------ttcatattgac-gtgaagtttggggttgagttttatacctatg |
10386394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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