View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3288_low_9 (Length: 455)

Name: NF3288_low_9
Description: NF3288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3288_low_9
NF3288_low_9
[»] chr5 (13 HSPs)
chr5 (218-436)||(2228646-2228864)
chr5 (9-230)||(2228881-2229091)
chr5 (9-159)||(203876-204026)
chr5 (41-168)||(1280395-1280522)
chr5 (35-168)||(3055499-3055632)
chr5 (9-148)||(27168802-27168941)
chr5 (9-159)||(23244569-23244719)
chr5 (29-159)||(26540674-26540804)
chr5 (9-159)||(22541912-22542062)
chr5 (35-137)||(22712924-22713026)
chr5 (35-168)||(11852732-11852865)
chr5 (9-168)||(8785799-8785958)
chr5 (38-121)||(19518970-19519053)
[»] scaffold0019 (1 HSPs)
scaffold0019 (9-168)||(134853-135012)
[»] chr7 (16 HSPs)
chr7 (9-168)||(26493713-26493872)
chr7 (10-168)||(19399995-19400153)
chr7 (10-168)||(27387306-27387464)
chr7 (9-168)||(45197661-45197819)
chr7 (35-168)||(9230418-9230551)
chr7 (10-157)||(38575289-38575436)
chr7 (9-156)||(23179885-23180031)
chr7 (35-168)||(8638631-8638765)
chr7 (9-112)||(25024596-25024699)
chr7 (12-114)||(14088819-14088921)
chr7 (12-114)||(14398837-14398939)
chr7 (12-114)||(25491636-25491738)
chr7 (9-89)||(9557784-9557864)
chr7 (12-168)||(18375423-18375577)
chr7 (78-168)||(43728013-43728103)
chr7 (9-61)||(10224015-10224067)
[»] chr1 (19 HSPs)
chr1 (9-159)||(9637147-9637297)
chr1 (9-159)||(35948977-35949127)
chr1 (17-168)||(25017403-25017554)
chr1 (35-168)||(40864744-40864877)
chr1 (39-159)||(14498923-14499043)
chr1 (9-168)||(30559004-30559163)
chr1 (9-168)||(48606611-48606770)
chr1 (9-168)||(52753819-52753975)
chr1 (36-159)||(21973814-21973937)
chr1 (12-159)||(26272931-26273078)
chr1 (9-160)||(30054846-30054997)
chr1 (84-168)||(17127456-17127540)
chr1 (10-83)||(11843899-11843972)
chr1 (9-112)||(17874851-17874954)
chr1 (35-150)||(32379881-32379995)
chr1 (6-60)||(170445-170500)
chr1 (9-80)||(41753057-41753128)
chr1 (21-83)||(28463197-28463259)
chr1 (389-422)||(25518558-25518591)
[»] chr8 (21 HSPs)
chr8 (9-159)||(30791457-30791607)
chr8 (9-168)||(13152393-13152552)
chr8 (9-168)||(16532631-16532789)
chr8 (10-169)||(21958528-21958687)
chr8 (14-121)||(32372022-32372129)
chr8 (9-168)||(9256406-9256565)
chr8 (9-168)||(27190788-27190947)
chr8 (9-121)||(32359486-32359598)
chr8 (9-168)||(14446849-14447008)
chr8 (9-143)||(10014434-10014568)
chr8 (9-121)||(32342880-32342992)
chr8 (9-121)||(32355367-32355479)
chr8 (9-159)||(24333740-24333893)
chr8 (9-114)||(40146009-40146114)
chr8 (88-159)||(10467790-10467861)
chr8 (77-136)||(28846667-28846726)
chr8 (35-118)||(2826331-2826411)
chr8 (13-119)||(34228232-34228338)
chr8 (88-168)||(42446935-42447015)
chr8 (9-60)||(24592336-24592387)
chr8 (9-62)||(42447048-42447101)
[»] chr6 (10 HSPs)
chr6 (9-168)||(11970977-11971135)
chr6 (10-168)||(12180525-12180683)
chr6 (41-154)||(25340476-25340589)
chr6 (9-159)||(24074438-24074588)
chr6 (9-143)||(3050905-3051041)
chr6 (9-159)||(25599178-25599331)
chr6 (35-168)||(32441999-32442129)
chr6 (39-121)||(30621237-30621318)
chr6 (221-284)||(12197803-12197866)
chr6 (10-136)||(1296558-1296684)
[»] chr2 (17 HSPs)
chr2 (12-143)||(33453190-33453321)
chr2 (12-159)||(19951833-19951980)
chr2 (226-402)||(33699150-33699336)
chr2 (9-159)||(35649659-35649809)
chr2 (9-159)||(22483575-22483725)
chr2 (9-159)||(12539600-12539749)
chr2 (9-159)||(34526378-34526529)
chr2 (304-402)||(33682093-33682191)
chr2 (29-159)||(22464696-22464826)
chr2 (9-107)||(26656340-26656437)
chr2 (13-121)||(7886661-7886767)
chr2 (73-156)||(13308745-13308828)
chr2 (19-168)||(34317482-34317625)
chr2 (41-121)||(18425992-18426072)
chr2 (35-100)||(31392485-31392550)
chr2 (9-62)||(1954952-1955005)
chr2 (9-66)||(13309708-13309765)
[»] chr4 (11 HSPs)
chr4 (9-136)||(3074418-3074545)
chr4 (9-168)||(31944633-31944792)
chr4 (9-168)||(12211225-12211384)
chr4 (6-168)||(42843724-42843889)
chr4 (9-168)||(53693033-53693192)
chr4 (10-168)||(55464660-55464818)
chr4 (55-168)||(27364900-27365013)
chr4 (9-121)||(8897925-8898037)
chr4 (9-168)||(4325429-4325587)
chr4 (9-121)||(10632643-10632757)
chr4 (9-66)||(25182878-25182935)
[»] chr3 (14 HSPs)
chr3 (12-159)||(43137153-43137299)
chr3 (10-168)||(31989046-31989204)
chr3 (10-159)||(53710424-53710573)
chr3 (12-168)||(37381871-37382027)
chr3 (9-168)||(3856875-3857034)
chr3 (35-159)||(51262005-51262129)
chr3 (10-168)||(24908393-24908551)
chr3 (9-118)||(24988812-24988921)
chr3 (47-156)||(15668002-15668111)
chr3 (9-121)||(22934798-22934910)
chr3 (10-66)||(51408609-51408665)
chr3 (9-60)||(9743393-9743444)
chr3 (15-61)||(43585933-43585979)
chr3 (95-159)||(43585843-43585907)
[»] scaffold0015 (1 HSPs)
scaffold0015 (10-169)||(214161-214320)
[»] scaffold0007 (1 HSPs)
scaffold0007 (9-159)||(259944-260094)
[»] scaffold0178 (1 HSPs)
scaffold0178 (35-168)||(17757-17890)
[»] scaffold0726 (1 HSPs)
scaffold0726 (9-118)||(950-1059)
[»] scaffold0168 (1 HSPs)
scaffold0168 (29-159)||(15840-15970)
[»] scaffold0198 (1 HSPs)
scaffold0198 (36-151)||(1430-1545)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-151)||(435350-435491)
[»] scaffold0012 (1 HSPs)
scaffold0012 (29-159)||(197131-197261)
[»] scaffold0170 (1 HSPs)
scaffold0170 (10-100)||(9161-9251)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 218 - 436
Target Start/End: Complemental strand, 2228864 - 2228646
Alignment:
Q  218 gttaactccattgttaacaatctcaataacatcttgaaacccaaagattaacttcatctgtttcaccagtctgtccaaattcttactggtaagtgcgcaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2228864 gttaactccattgttaacaatctcaataacatcttgaaacctaaagattaacttcatctgtttcaccagtctgtccaaattcttactggtaagtgcgcaa 2228765  T
Q  318 caatattcccattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaacaattgattctagggtt 417  Q
    |||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2228764 caatatttttattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctgaataccaattgttaggggaaacaattgattctagggtt 2228665  T
Q  418 tatgattttatgtgcttga 436  Q
    |||||||||||||||||||    
T  2228664 tatgattttatgtgcttga 2228646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 9 - 230
Target Start/End: Complemental strand, 2229091 - 2228881
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||    
T  2229091 gagatgaaatataacctaccaatagcgtgctaaataaaattaggaggtaaatgcccttcctagaacctctttgcgatgaatgttcaaataatatcaacat 2228992  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccacattgaaccacattctattctagtcttgaaggttctattctg 208  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||          |||||||||||||||||||||||||||||||||||||    
T  2228991 catcaaatgacttaaatatcttccgctcagtgtaatgtatcat-aagtcataa----------aaccacattctattctagtcttgaaggttctattctg 2228903  T
Q  209 gtcttgaaggttaactccattg 230  Q
    |||||||| |||||||||||||    
T  2228902 gtcttgaaagttaactccattg 2228881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 204026 - 203876
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||  |  |||||  ||||||||||||||||||||||||||| |||| | || |||||||| |||||||||||| ||||||||||||||    
T  204026 gagatgaaatataatttgtcaatagtgtgctaaataaaattaggaggtaaatgtcctttccgagacctctttccggtgaatgttcgaataatatcaacat 203927  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||||| |||||| |||||| |||||||||||||||    
T  203926 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcat 203876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 41 - 168
Target Start/End: Complemental strand, 1280522 - 1280395
Alignment:
Q  41 aataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtg 140  Q
    ||||||||||||||||||||||| || | || ||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||| |||||| |||    
T  1280522 aataaaattaggaggtaaatgccttttccgagacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtg 1280423  T
Q  141 taatatatcatcaagtcataaaaccaca 168  Q
    ||| |||||||||| ||||  |||||||    
T  1280422 taacatatcatcaaatcattgaaccaca 1280395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 3055632 - 3055499
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    ||||||||||||||||||||||||||||| ||  ||| ||||| |||||  |||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  3055632 gtgctaaataaaattaggaggtaaatgccatttatgagacctcattgcgcggaatgttcgaataatatcaacatcatcaaatgacttgaatatctcccgc 3055533  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||  ||||| |||||||||||||||  |||||||    
T  3055532 tcgatgtaacatatcatcaagtcattgaaccaca 3055499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 27168802 - 27168941
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||||  ||||||  ||||||||||||||||||||||||||||||||  ||| ||||| || |||||||||||| ||||||||||||||    
T  27168802 gagatgaaacataaccatccaatagtgtgctaaataaaattaggaggtaaatgccctttatgagacctcatttcggtgaatgttcgaataatatcaacat 27168901  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatat 148  Q
     ||||| |||||| ||||||| |||||| |||||| ||||    
T  27168902 tatcaagtgacttgaatatctcccgctcggtgtaacatat 27168941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 23244569 - 23244719
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| ||  |||||  ||| ||||||||||||| ||||| |||||||| |||| ||||| ||||||| ||||||||||||||||||||||    
T  23244569 gagatgaaatataatctgtcaatagtgtggtaaataaaattagcaggtacatgccctttctgagacctcgttgcggttaatgttcaaataatatcaacat 23244668  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||  |||| |||||||||    ||| |||||||||||||||    
T  23244669 catcaagtgactagaataacttccgctcgacataacatatcatcaagtcat 23244719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 26540674 - 26540804
Alignment:
Q  29 aatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatc 128  Q
    |||| ||||||| ||||||||||||||||||||||||| |||| |  |||||||||||||||||| |||||||||||  ||||||| ||| || ||||||    
T  26540674 aatagcgtgctagataaaattaggaggtaaatgccctttctgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 26540773  T
Q  129 ttccgctcagtgtaatatatcatcaagtcat 159  Q
    | |||||| |||||| |||||||||| ||||    
T  26540774 tcccgctcggtgtaacatatcatcaaatcat 26540804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 22542062 - 22541912
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||| ||||||||||||  ||||| ||||||||||||||||| ||||||||||||||| | |  ||||||||   | |||||||| |||||||| |||||    
T  22542062 gagaagaaatataacctgacaatagcgtgctaaataaaattatgaggtaaatgccctttccgcgacctctttcgagggaatgttcgaataatattaacat 22541963  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||| | |||||| ||||||||||| ||  ||||| |||||||||||||||    
T  22541962 catcgagtgacttgaatatcttccgttcgatgtaacatatcatcaagtcat 22541912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 137
Target Start/End: Original strand, 22712924 - 22713026
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||  |||||||||||||||||||| |||| | ||||||  ||||    
T  22712924 gtgctaaataaaattaggaggtaaatgctctttctgagacctctttgcggtgaatgtttgaataatatcaacatcatcaagtgacatgaatatcccccgc 22713023  T
Q  135 tca 137  Q
    |||    
T  22713024 tca 22713026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 11852865 - 11852732
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    ||||||||||||||||| |||||||| | ||| || | ||||||||| | | ||||||| |||||||||||||||||||| ||| |||||||||| |||     
T  11852865 gtgctaaataaaattagaaggtaaatactctttcttagacctctttgtgttaaatgttcgaataatatcaacatcatcaagtgagttaaatatctcccgt 11852766  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    || |||||| |||||||||||||||  |||||||    
T  11852765 tcggtgtaacatatcatcaagtcattgaaccaca 11852732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 8785958 - 8785799
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||||||  |||||   |||||||||||||||||||||||   |||||   || |||| |||||||||||||||| ||||||||||| ||    
T  8785958 gagatgaaacataacctgtcaataatatgctaaataaaattaggaggtaagaacccttttcgagacctatttgcggtgaatgttcgaataatatcaatat 8785859  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| ||| || ||||||| |||||   |||||||||| ||||||||||  |||||||    
T  8785858 catcaactgaattgaatatctcccgcttgatgtaatatattatcaagtcattgaaccaca 8785799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 19518970 - 19519053
Alignment:
Q  38 ctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgactt 121  Q
    ||||||||||||||| |||||||| |||| |  | ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  19518970 ctaaataaaattaggtggtaaatgacctttccaatacctctttgcggtgaatgttcgaataatatcaacatcatcaagtgactt 19519053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 134853 - 135012
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||| ||||||||||||||    
T  134853 gagatgaaatataacctatcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttccggtgaatgttcgaataatatcaacat 134952  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  134953 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcatttaaccaca 135012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 26493713 - 26493872
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||||||||||||||| | || |||||||| |||||||||||| ||||||||||||||    
T  26493713 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgagacctctttacggtgaatgttcgaataatatcaacat 26493812  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| ||||||| |||||| ||||||  ||||||||||||||  |||||||    
T  26493813 catcaagtgacttgaatatctcccgctcggtgtaacgtatcatcaagtcatttaaccaca 26493872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 19400153 - 19399995
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | |  ||||||||   |||||||||| |||||||||||||||    
T  19400153 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 19400054  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||  ||||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  19400053 atcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccaca 19399995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 27387306 - 27387464
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||||||| ||| | |  ||||||||   |||||||||| |||||||||||||||    
T  27387306 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgctctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 27387405  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||| |||||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  27387406 atcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccaca 27387464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 45197819 - 45197661
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| || || ||||||||| ||||||||||| || |||||||||||    
T  45197819 gagatgaaatataacctaccaatagggtgctaaataaaattaggatgtaaatgccctccccgagacctctttgtggtgaatgttcgaacaatatcaacat 45197720  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    | |||| |||||| ||||||| | ||||  || ||||||||||||||||||  |||||||    
T  45197719 cgtcaagtgacttgaatatctcctgctcgatg-aatatatcatcaagtcattgaaccaca 45197661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 9230551 - 9230418
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||| ||||||||| ||||||||||||||||||||||||||| | ||||| ||||    
T  9230551 gtgctaaataaaattaggaggtaaatgcccttttcgatacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgagtatctcccgc 9230452  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||  ||||| |||||||||||||||  |||||||    
T  9230451 tctatgtaacatatcatcaagtcattgaaccaca 9230418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 157
Target Start/End: Original strand, 38575289 - 38575436
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    ||||||||||||||||  ||||| ||||||||||||||||||||||||||||  ||| | |  ||||||||   |||||||||| |||||||||||||||    
T  38575289 agatgaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgttctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 38575388  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtc 157  Q
    ||||| |||||| ||||||| |||||| |||||| |||||||||||||    
T  38575389 atcaagtgactttaatatctcccgctcggtgtaacatatcatcaagtc 38575436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 23179885 - 23180031
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  ||||||||| |||||||||| ||||||||||| |  | ||||||||||||||||||||| ||||||||||||||    
T  23179885 gagatgaaacataacttgtcaatagtgtgctaaattaaattaggag-taaatgccctttccaagacctctttgcggtgaatgttcgaataatatcaacat 23179983  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagt 156  Q
     ||||| || ||| |||||||  ||||| |||||| ||||||||||||    
T  23179984 tatcaagtgccttgaatatctctcgctcggtgtaacatatcatcaagt 23180031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 8638765 - 8638631
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacc-tctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccg 133  Q
    |||||||||||||||||||||||||||||||| | || ||| |||||||| ||||||||| ||||||||| | ||||||||||||||| |||||||   |    
T  8638765 gtgctaaataaaattaggaggtaaatgccctttccgagaccctctttgcgttgaatgttcgaataatatcgatatcatcaaatgacttgaatatctcttg 8638666  T
Q  134 ctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
     || || ||| |||||||||||| || ||||||||    
T  8638665 ttcggtataacatatcatcaagtaattaaaccaca 8638631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 25024699 - 25024596
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||| |  ||||| | |||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||| | ||   |||||||||    
T  25024699 gagatgaaatataacatgtcaataacatgcttaataaaattaggaggtaaatgccctttctgagacctctttgtggtgaatgtccgaaacttatcaacat 25024600  T
Q  109 catc 112  Q
    ||||    
T  25024599 catc 25024596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14088921 - 14088819
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||||||||| |  |||||  ||||||||||||||||||||||||||||| || | || ||||||||||| || |||||  |||||||||| ||||||    
T  14088921 atgaaatataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcat 14088822  T
Q  112 caa 114  Q
    |||    
T  14088821 caa 14088819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 14398939 - 14398837
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||||||||| |  |||||  ||||||||||||||||||||||||||||| || | || ||||||||||| || |||||  |||||||||| ||||||    
T  14398939 atgaaatataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccttttccgagacctctttgcgatggatgtttgaataatatcagcatcat 14398840  T
Q  112 caa 114  Q
    |||    
T  14398839 caa 14398837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 25491636 - 25491738
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||||||||| |  |||||  ||| |||||||||| |||| ||||||||| ||  ||| |||||||| | |||||||||| |||||||||||||||||    
T  25491636 atgaaatataacatgtcaatagtgtgataaataaaatcaggaagtaaatgccttttttgagacctctttacagtgaatgttcgaataatatcaacatcat 25491735  T
Q  112 caa 114  Q
    |||    
T  25491736 caa 25491738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 9557864 - 9557784
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaat 89  Q
    |||||||||  |||||| | ||||  |||||||||||||||||||||||||| ||||| | || |||||||||||||||||    
T  9557864 gagatgaaacttaacctccgaatagtgtgctaaataaaattaggaggtaaatcccctttcagagacctctttgcggtgaat 9557784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 18375577 - 18375423
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||| |||| ||||||| |  |||||||||  |||||||| ||||||||||||   || |||| || ||  ||||||||| |||||||||||||| ||    
T  18375577 atgaaacataatctaccaaaagtgtgctaaatcgaattaggaagtaaatgcccttttcgagacct-ttcgca-tgaatgttcgaataatatcaacattat 18375480  T
Q  112 caaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    | | ||| || ||||||| ||||||  |||||||||||||||||||||  |||||||    
T  18375479 ctagtgatttgaatatctcccgctccatgtaatatatcatcaagtcattgaaccaca 18375423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 43728103 - 43728013
Alignment:
Q  78 tttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| ||||||||  |||||||||||||||||||| |||||| ||||||| ||| ||  | ||| |||||||||||||||  |||||||    
T  43728103 tttgcgatgaatgtttgaataatatcaacatcatcaactgacttgaatatctcccgttcgatataacatatcatcaagtcattgaaccaca 43728013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 10224067 - 10224015
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatg 61  Q
    |||||||||||||| || || |||  ||| |||||||||||||||||||||||    
T  10224067 gagatgaaatataatctgccgatagtgtggtaaataaaattaggaggtaaatg 10224015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 9637297 - 9637147
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||||||| |||||  ||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||    
T  9637297 gagatgaaacataacctatcaatagtgtgctaaataaaattaggatgtaaatgccctttccgagacctctttgcggtgaatgttcaaataatatcaacat 9637198  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||||  |||||| |||||| |||||||||||||||    
T  9637197 catcaagtgacttgaatatcacccgctcggtgtaacatatcatcaagtcat 9637147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 35948977 - 35949127
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| ||| | ||| ||||| |||||||||||||||||||||| |||| | || |||||||| |||||||||||| ||||| ||||||||    
T  35948977 gagatgaaatataatctatctatagcgtgcaaaataaaattaggaggtaaatgtcctttccgagacctcttttcggtgaatgttcgaataacatcaacat 35949076  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||||| |||||| |||||| |||||||||||||||    
T  35949077 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcat 35949127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 168
Target Start/End: Complemental strand, 25017554 - 25017403
Alignment:
Q  17 atataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaat 116  Q
    |||||||||  |||||  ||||||||||||||||||||||| |||||||| |||| |||||||||||||||| |||| |||||||||||||||||||| |    
T  25017554 atataacctgtcaatagtgtgctaaataaaattaggaggtatatgccctttctgagacctctttgcggtgaacgttcgaataatatcaacatcatcaagt 25017455  T
Q  117 gacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    || || |||||||  ||||| |||||| |||||||||||||||  |||||||    
T  25017454 gatttgaatatctctcgctcggtgtaagatatcatcaagtcattgaaccaca 25017403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 40864744 - 40864877
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| |||||| ||||||   ||     
T  40864744 gtgctaaataaaattaggaggtaaatgccctttctaaaacctctttgcggtgaatgttcgaataatatcaacattatcaagtgacttgaatatccctcgt 40864843  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    || |||||| |||||||||||||||  |||||||    
T  40864844 tcggtgtaagatatcatcaagtcattgaaccaca 40864877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 14499043 - 14498923
Alignment:
Q  39 taaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcag 138  Q
    |||||| |||||||||||||||| |||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||      
T  14499043 taaatataattaggaggtaaatgtcctttctgagacctctttgcgatgaatgttcgaataatatcaacatcatcaaatgacttgaatatctcccgctcga 14498944  T
Q  139 tgtaatatatcatcaagtcat 159  Q
    ||||| |||||||||||||||    
T  14498943 tgtaagatatcatcaagtcat 14498923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 30559004 - 30559163
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||| |||||||||  ||||||||||||||||||||||||||  | ||  ||| | || ||| |||||||||||| |||||||||| |||    
T  30559004 gagatgaaacataatctaccaatagtgtgctaaataaaattaggaggtaaatatcatttatgagatctatttacggtgaatgttcgaataatatcagcat 30559103  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| |||||||  ||||| |||||| |||||||||||||||| |||||||    
T  30559104 catcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagtcatagaaccaca 30559163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 48606611 - 48606770
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||| || ||||||  |||||||||||||||| ||||||||||||||| |  | ||||||||||||||| ||||  ||||||||||||||    
T  48606611 gagatgaaacataatctgccaatagtgtgctaaataaaattatgaggtaaatgccctttcgaagacctctttgcggtgagtgtttgaataatatcaacat 48606710  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
     ||||| | |||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  48606711 tatcaagttacttgaatatctcccgctcggtgtaacatatcatcaagtcattgaaccaca 48606770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 52753819 - 52753975
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  |||||| ||||||||||||||||||| ||||| | || |||||||||||   ||||||| ||||||||||||||    
T  52753819 gagatgaaacataacttgtcaatagtgtgctagataaaattaggaggtaaataccctttccgagacctctttgcg---aatgttcgaataatatcaacat 52753915  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||||||||||| ||||||| ||| ||  ||||| |||||||||||||||  |||||||    
T  52753916 catcaaatgacttgaatatctcccgttcgatgtaacatatcatcaagtcattgaaccaca 52753975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 36 - 159
Target Start/End: Original strand, 21973814 - 21973937
Alignment:
Q  36 tgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgct 135  Q
    ||||| ||||||||||||||||||||||||| | || |  |||||||||||||||||| |||||||||||  ||||||| ||| || ||||||| |||||    
T  21973814 tgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatctcccgct 21973913  T
Q  136 cagtgtaatatatcatcaagtcat 159  Q
    |||||||| |||||||||| ||||    
T  21973914 cagtgtaacatatcatcaaatcat 21973937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 26272931 - 26273078
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||||||||| | ||||||  ||||||||||||||||| |||||| ||||||| | || |||| |||||| ||||||||| |||||||| ||||||||    
T  26272931 atgaaatataacatgccaatagtgtgctaaataaaattagtaggtaattgccctttccgagacctgtttgcgatgaatgttcgaataatattaacatcat 26273030  T
Q  112 caaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||  |||||| ||||||| | ||||  ||||| |||||||||| ||||    
T  26273031 cacgtgacttgaatatctcctgctcgatgtaacatatcatcaaatcat 26273078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 160
Target Start/End: Complemental strand, 30054997 - 30054846
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  ||||||||||||||||||||||||||| | ||  ||| |||||||||||| ||| |||| |||||| |||| ||    
T  30054997 gagatgaaacataacgtgtcaataatgtgctaaataaaattaggaggtaaatgtcatttatgatacctctttgcggagaaggttcgaataatgtcaatat 30054898  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcata 160  Q
     ||||| |||||| ||||||| |||||| |||||| ||||||| ||||||||    
T  30054897 gatcaagtgacttgaatatctcccgctcggtgtaacatatcattaagtcata 30054846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 17127540 - 17127456
Alignment:
Q  84 gtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||||||| ||||||||||||||||||||  ||||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  17127540 gtgaatgttcgaataatatcaacatcatcaagcgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccaca 17127456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 11843899 - 11843972
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcg 83  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| |||| | || |||| ||||||    
T  11843899 agatgaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatgtcctttcagagacctatttgcg 11843972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Complemental strand, 17874954 - 17874851
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| ||  |||||  ||| ||||||||||||| |||||||||  |||   || ||||||||||||||||||||  ||||||||||||||    
T  17874954 gagatgaaatataatctgtcaatagtgtggtaaataaaattagaaggtaaatgatcttttcgagacctctttgcggtgaatgtttgaataatatcaacat 17874855  T
Q  109 catc 112  Q
    ||||    
T  17874854 catc 17874851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 32379881 - 32379995
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    ||||||||||||||||||||||||||| | ||   || ||||||||||| | ||||||| |||||||||||||||||||| ||| || ||||||| |||     
T  32379881 gtgctaaataaaattaggaggtaaatgtcattttcgatacctctttgcg-taaatgttcgaataatatcaacatcatcaagtgaattgaatatctcccgt 32379979  T
Q  135 tcagtgtaatatatca 150  Q
    |  |||||| ||||||    
T  32379980 ttggtgtaacatatca 32379995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 170445 - 170500
Alignment:
Q  6 agtgagatgaaatataaccta-ccaatatcgtgctaaataaaattaggaggtaaat 60  Q
    ||||||||||||||||||||  ||||||  ||||||||||||||||||||||||||    
T  170445 agtgagatgaaatataaccttgccaataatgtgctaaataaaattaggaggtaaat 170500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 41753128 - 41753057
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctcttt 80  Q
    ||||| |||||||||||||||||| |||||||||||||||||  || |||||||| || |||  ||||||||    
T  41753128 gagataaaatataacctaccaataacgtgctaaataaaattataagataaatgccatttctgcgacctcttt 41753057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 28463259 - 28463197
Alignment:
Q  21 aacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcg 83  Q
    |||| |||||||  |||||||||||||||||||||| ||||||||| |  | |||||||||||    
T  28463259 aacccaccaatagtgtgctaaataaaattaggaggtgaatgccctttccaagacctctttgcg 28463197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 25518558 - 25518591
Alignment:
Q  389 tgttaggggaaacaattgattctagggtttatga 422  Q
    ||||||||||||||||||| ||||||||||||||    
T  25518558 tgttaggggaaacaattgactctagggtttatga 25518591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 30791457 - 30791607
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||||||||||| | || ||||||||||||||||||||| |||||||||||  |    
T  30791457 gagatgaaatataacctgtcaatagcgtgctaaataaaattaggtggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaatgt 30791556  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||||| |||||| |||||| |||||||||||||||    
T  30791557 catcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcat 30791607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 13152393 - 13152552
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  |||||||||||||||||||||||||||||||| | || ||||||||||| ||||||||  ||||||| ||||||    
T  13152393 gagatgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatgccctttccgagacctctttgcgatgaatgttggaataataccaacat 13152492  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||||||||||| ||||||| ||||||  ||||| |||||||||||||||  |||||||    
T  13152493 catcaaatgacttgaatatctcccgctcgatgtaacatatcatcaagtcattgaaccaca 13152552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 16532631 - 16532789
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| | || | ||||||||||||||||||  ||||||||||||||    
T  16532631 gagatgaaatataacc-agcaatagcgtgctaaataaaattaggaggtaaatgccctttccgatatctctttgcggtgaatgtttgaataatatcaacat 16532729  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| |||||||  | ||  || ||| |||||||||||||||  |||||||    
T  16532730 catcaagtgacttgaatatctctcacttggtataacatatcatcaagtcattgaaccaca 16532789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 21958687 - 21958528
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | |  ||||||||   || ||||||| |||||||||||||||    
T  21958687 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatc 21958588  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccacat 169  Q
    ||||| |||||  ||||||| | |||| |||||| |||||||||||||||  ||||||||    
T  21958587 atcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacat 21958528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 32372129 - 32372022
Alignment:
Q  14 gaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatca 113  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||  ||| ||||||||||||||||||||| |||||||||||||||||||    
T  32372129 gaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatgacctttttgagacctctttgcggtgaatgttcgaataatatcaacatcatca 32372030  T
Q  114 aatgactt 121  Q
    | ||||||    
T  32372029 agtgactt 32372022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 9256565 - 9256406
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  ||||||||||||||||||||||||||| | ||   || ||||||||||| ||||||||| ||| ||||||||||    
T  9256565 gagatgaaacataacttgtcaatagtgtgctaaataaaattaggaggtaaatgtcatttgcgagacctctttgcgatgaatgttcgaattatatcaacat 9256466  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| ||||||| ||||||  ||||| ||||||||||||||| ||||||||    
T  9256465 catcaagtgacttgaatatctcccgctcgatgtaacatatcatcaagtcattaaaccaca 9256406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 27190947 - 27190788
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| | ||||||  || |||||||||||||||||||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||    
T  27190947 gagatgaaacataacttgccaatagtgtactaaataaaattaggaggtaaatgtcctttctgagacatctttgcggtgaatattcgagtaatatcaacat 27190848  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| ||||||| |||||  ||| || |||||||||||||||  |||||||    
T  27190847 catcaagtgacttgaatatctcccgctaggtgcaacatatcatcaagtcattgaaccaca 27190788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32359598 - 32359486
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| |||||||||  ||||||||||||||||||||||||||| | ||  ||| |||||||||| |||||||||| ||||||||||||||    
T  32359598 gagatgaaatataatctaccaatagtgtgctaaataaaattaggaggtaaatgacatttttgagacctctttgcagtgaatgttcgaataatatcaacat 32359499  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32359498 catcaagtgactt 32359486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 14447008 - 14446849
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||| ||||| | |||||  |||||||||||||||||||||| |||| |||| | || |||||||||| |||||||||  ||||||||||||||    
T  14447008 gagatgaaatgtaaccgatcaatagtgtgctaaataaaattaggaggtgaatgtcctttccgagacctctttgcagtgaatgttagaataatatcaacat 14446909  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| |||||||  | ||  |||||| |||||||||||||||  |||||||    
T  14446908 catcaagtgacttgaatatctctctcttggtgtaacatatcatcaagtcattgaaccaca 14446849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 10014434 - 10014568
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||  |  |||||  |||||||||||||||||||||||||||||||| |  ||| |||||| |||||||||||  ||||||||||||||    
T  10014434 gagatgaaatataatatgtcaataatgtgctaaataaaattaggaggtaaatgccctttccaaaatctctttccggtgaatgtttgaataatatcaacat 10014533  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaa 143  Q
    |||||| |||| | |||||||||||||| ||||||    
T  10014534 catcaagtgacatgaatatcttccgctcggtgtaa 10014568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32342992 - 32342880
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||| |||||||   ||||||||||||||||||||||||||| ||||  ||| |||| ||||| |||||||||| ||||||||||||||    
T  32342992 gagatgaaatataacataccaatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacat 32342893  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32342892 catcaagtgactt 32342880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 32355479 - 32355367
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||| |||||||   ||||||||||||||||||||||||||| ||||  ||| |||| ||||| |||||||||| ||||||||||||||    
T  32355479 gagatgaaatataacataccaatggtgtgctaaataaaattaggaggtaaatgacctttttgagacctttttgcagtgaatgttcgaataatatcaacat 32355380  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  32355379 catcaagtgactt 32355367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 24333893 - 24333740
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaat---gttcaaataatatcaa 105  Q
    ||||||||| ||||||   |||||  |||||||||||||| | ||||||||| | ||| | || ||||||||| |||||||   |||| |||||||| ||    
T  24333893 gagatgaaacataaccggtcaatagtgtgctaaataaaatcatgaggtaaattctctttccgagacctctttgtggtgaataatgttcgaataatattaa 24333794  T
Q  106 catcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||||||| |||||| ||||||| ||||||||||||| ||||||| |||||||    
T  24333793 catcatcaagtgacttgaatatctcccgctcagtgtaacatatcataaagtcat 24333740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 40146009 - 40146114
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||| || ||||||  ||||||||||||||||||||||| ||||| || | || |||||||||  |||||||||| ||||||||||||||    
T  40146009 gagatgaaacataatctgccaatagtgtgctaaataaaattaggaggtagatgccatttccgagacctctttgttgtgaatgttcgaataatatcaacat 40146108  T
Q  109 catcaa 114  Q
    ||||||    
T  40146109 catcaa 40146114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 88 - 159
Target Start/End: Complemental strand, 10467861 - 10467790
Alignment:
Q  88 atgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| ||||||||||||||||||||||||||| | ||||| ||||||  ||||| |||||||||||||||    
T  10467861 atgttcgaataatatcaacatcatcaaatgacttgattatctcccgctcgatgtaacatatcatcaagtcat 10467790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 28846726 - 28846667
Alignment:
Q  77 ctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctc 136  Q
    ||||||||||||||||| |||||||||||||||||||| |||||| ||||||| ||||||    
T  28846726 ctttgcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctc 28846667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 2826331 - 2826411
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatga 118  Q
    |||||||||||||||||    ||||||||| | | || ||||||||||||||||||||| |||||||||||||| |||||||||    
T  2826331 gtgctaaataaaattaga---taaatgcccatgccgatacctctttgcggtgaatgttcgaataatatcaacattatcaaatga 2826411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 34228232 - 34228338
Alignment:
Q  13 tgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatc 112  Q
    ||||||||||| |  |||||  ||| |||||||||| |||||||||||||  || |  | ||||||||| ||| ||||||| ||||||||||||||||||    
T  34228232 tgaaatataacatgtcaataatgtgataaataaaatgaggaggtaaatgcaatttccaagacctctttgtggtaaatgttcgaataatatcaacatcatc 34228331  T
Q  113 aaatgac 119  Q
    || ||||    
T  34228332 aagtgac 34228338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 42447015 - 42446935
Alignment:
Q  88 atgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||||||||||||| ||| ||||||| |||||| ||||||||||||||  ||||| |||| |||| |||||  |||||||    
T  42447015 atgttcaaataatataaacgtcatcaagtgacttgaatatcttccgctcgatgtaacatataatcacgtcattcaaccaca 42446935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 24592336 - 24592387
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaat 60  Q
    ||||||||| ||||||| ||||||  ||||||||||||||||||||||||||    
T  24592336 gagatgaaacataacctgccaatagtgtgctaaataaaattaggaggtaaat 24592387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 42447101 - 42447048
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgc 62  Q
    ||||||||||||||| |  || ||  ||||||||||||||||||||||||||||    
T  42447101 gagatgaaatataacttgtcattagtgtgctaaataaaattaggaggtaaatgc 42447048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 11971135 - 11970977
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||||||  |||||  |||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||  | |||||||||||    
T  11971135 gagatgaaacataacctgtcaatagtgtgctaaataaaattaggaggtaaatgccctttctgagacctcttt-cggtgaatgttcgcaaaatatcaacat 11971037  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| |||||||||||||| |||||| |||| ||||||||||  |||||||    
T  11971036 catcaagtgacttgaatatcttccgctcggtgtaacatatgatcaagtcattgaaccaca 11970977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 12180525 - 12180683
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||| |||||||  |||||  ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |    
T  12180525 agatgaaacataacctgtcaataatgtgctaaataaaattagaaggtaaatgcccttcccgagacctctttgcggtgaatgttcgaataatatcaacaac 12180624  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||| |||||| ||| ||| || ||| |||||| |||||||||||||||  |||||||    
T  12180625 atcaagtgacttgaatttctcccactcggtgtaacatatcatcaagtcattgaaccaca 12180683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 25340589 - 25340476
Alignment:
Q  41 aataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtg 140  Q
    |||||||||||||||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||  |||    
T  25340589 aataaaattaggaggtaaatgcactttctgagacctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttaaatatcttccactgggtg 25340490  T
Q  141 taatatatcatcaa 154  Q
    ||| ||||||||||    
T  25340489 taacatatcatcaa 25340476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 24074588 - 24074438
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggt-gaatgttcaaataatatcaaca 107  Q
    |||||||||||||| ||  ||| | |||||||||||||||||||||||||||| | |||| || |||||||| |||| |||||||| |||||||||||||    
T  24074588 gagatgaaatataatctgtcaaaaacgtgctaaataaaattaggaggtaaatgtcattcc-gagacctctttccggttgaatgttcgaataatatcaaca 24074490  T
Q  108 tcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||||| | |||| ||||||| || ||| |||||| |||||||||||||||    
T  24074489 tcatcaagtaacttgaatatctccccctcggtgtaacatatcatcaagtcat 24074438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 143
Target Start/End: Complemental strand, 3051041 - 3050905
Alignment:
Q  9 gagatgaaatataacc--taccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaac 106  Q
    ||||||||||||||||  |  |||||  |||||||||||||||||| ||||||||| ||| | || |||||||| |||||||||||  ||||||||||||    
T  3051041 gagatgaaatataacccgtgtcaatagtgtgctaaataaaattaggtggtaaatgctctttccgagacctctttccggtgaatgtttgaataatatcaac 3050942  T
Q  107 atcatcaaatgacttaaatatcttccgctcagtgtaa 143  Q
    |||||||| |||||| ||||||| |||||| ||||||    
T  3050941 atcatcaagtgacttgaatatctcccgctcggtgtaa 3050905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 25599331 - 25599178
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtga---atgttcaaataatatcaa 105  Q
    ||||||||||||||| | ||||||  ||| ||||| ||||||||| |||||||||||| | || ||||||||||| |||   |||||| |||||||||||    
T  25599331 gagatgaaatataacttgccaatagtgtgttaaatcaaattaggacgtaaatgccctttccgagacctctttgcgatgatgaatgttcgaataatatcaa 25599232  T
Q  106 catcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||||||| |||||| | ||||| || |||  ||||| ||| |||||||||||    
T  25599231 catcatcaagtgacttgattatctcccactcgatgtaacataccatcaagtcat 25599178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 32441999 - 32442129
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    |||||||||||||||| ||||||||||||||| | || ||||||||| | ||||||||| |||||||||||||||||||| |||  | | ||||||||||    
T  32441999 gtgctaaataaaattaagaggtaaatgccctttccgatacctctttgggatgaatgttcgaataatatcaacatcatcaagtga--ttattatcttccgc 32442096  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||  ||||| ||||||| |||||||  |||||||    
T  32442097 tcgatgtaacatatcat-aagtcattgaaccaca 32442129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 30621318 - 30621237
Alignment:
Q  39 taaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgactt 121  Q
    ||||||||||||||||||||||| |||| | || |||||||| || ||||||||| |||||||||||||||||||| ||||||    
T  30621318 taaataaaattaggaggtaaatgtcctttccgagacctcttt-cgatgaatgttcgaataatatcaacatcatcaagtgactt 30621237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 12197803 - 12197866
Alignment:
Q  221 aactccattgttaacaatctcaataacatcttgaaacccaaagattaacttcatctgtttcacc 284  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  12197803 aacttcattgttgacaatctcaagaacatcttgaaacccaaagatcaccttcatctgtttcacc 12197866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 1296684 - 1296558
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||||||||||| || |||  ||| |||||||||| |||||||||||| |||| | || ||||||||   |||||| ||  |||||||| || |||    
T  1296684 agatgaaatataacctgccgatagtgtggtaaataaaataaggaggtaaatggcctttccgagacctctttattgtgaatatttgaataatattaatatc 1296585  T
Q  110 atcaaatgacttaaatatcttccgctc 136  Q
    ||||| |||||| ||||||| ||||||    
T  1296584 atcaagtgacttgaatatctcccgctc 1296558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 33453190 - 33453321
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    |||||||||||| | ||||||   ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||    
T  33453190 atgaaatataacttgccaatagtctgctaaataaaattaggaggtaaatgctctttctgatacctctttgcggtgaatgttcgaataatatcaacatcat 33453289  T
Q  112 caaatgacttaaatatcttccgctcagtgtaa 143  Q
    ||| |||||||||||||| |||||| ||||||    
T  33453290 caagtgacttaaatatctcccgctcggtgtaa 33453321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 19951833 - 19951980
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    ||||||||||||||  |||||  ||||||||| ||||||| ||||||||||||||   || ||||||||||||||||||||| |||||||||||||||||    
T  19951833 atgaaatataacctgtcaatagtgtgctaaattaaattagaaggtaaatgcccttttcgagacctctttgcggtgaatgttcgaataatatcaacatcat 19951932  T
Q  112 caaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||| |||||| |||||||  |||||||||| | ||||| |||||||||    
T  19951933 caagtgacttgaatatctctcgctcagtgtgacatatcgtcaagtcat 19951980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 226 - 402
Target Start/End: Complemental strand, 33699336 - 33699150
Alignment:
Q  226 cattgttaacaatctcaataacatcttgaaacccaaagattaacttcatctgtttcaccagtctgtccaaattcttac----------tggtaagtgcgc 315  Q
    ||||||| |||| ||||| ||||| |||||| |||||||| |  |||||||||||||||   |||||| ||||||| |          ||||||||||||    
T  33699336 cattgttgacaagctcaagaacatattgaaatccaaagatgactttcatctgtttcacccacctgtcccaattctttccatcaaaaattggtaagtgcgc 33699237  T
Q  316 aacaatattcccattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaaca 402  Q
    |||| ||||| ||||| |||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  33699236 aacagtattcgcattgaaattcatgattgatcttcttcttggatcaaagtaatgtatggctctggataccaattgttaggggaaaca 33699150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 159
Target Start/End: Original strand, 35649659 - 35649809
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||||||| ||| |  || |||||||||||||||| ||||||| ||||   || | |||||||| |||||||||  ||||||||||||||    
T  35649659 gagatgaaatataacctatcaaaaatgtactaaataaaattaggaagtaaatgtccttttcgagatctctttgcagtgaatgtttcaataatatcaacat 35649758  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||||||||||| ||||||| |||||| |||||| |||||||||||||||    
T  35649759 catcaaatgacttgaatatctcccgctcggtgtaacatatcatcaagtcat 35649809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 22483725 - 22483575
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||| ||||| |||| | |||| ||||||| ||||||||||||||||||||||||| | || |  |||||||||||||||||| |||||||||||  |    
T  22483725 gagatggaatattacctgcaaatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgt 22483626  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| ||| || ||||||| |||||| |||||| |||||||||||||||    
T  22483625 catcaagtgatttgaatatctcccgctcggtgtaacatatcatcaagtcat 22483575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 12539749 - 12539600
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  |||||||||||||||||||||||||||  ||| |  | ||||||||||||||||||||| ||||||||||||||    
T  12539749 gagatgaaacataacgtgtcaatagtgtgctaaataaaattaggaggtaaatgttctttccaagacctctttgcggtgaatgttcgaataatatcaacat 12539650  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||||||  |||| || ||| |||||||||||||||    
T  12539649 catcaagtgacttgaatatcttatgctcggt-taacatatcatcaagtcat 12539600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 34526529 - 34526378
Alignment:
Q  9 gagatgaaatataacctaccaa-tatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaaca 107  Q
    |||||| ||||| |||| |||| || ||||||| ||||||||||||||||||||||||| | || |  |||||||||||||||||| |||||||||||      
T  34526529 gagatggaatattacctgccaaatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatg 34526430  T
Q  108 tcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||||| ||| || ||||||| |||||| |||||| |||||||||| ||||    
T  34526429 tcatcaagtgatttgaatatctcccgctcggtgtaacatatcatcaaatcat 34526378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 304 - 402
Target Start/End: Complemental strand, 33682191 - 33682093
Alignment:
Q  304 tggtaagtgcgcaacaatattcccattggaattcatgattgatcttcttgttggatcaaagtaatgttaggctctggataccaattgttaggggaaaca 402  Q
    ||||||||||||| ||||||||| || |||||||||||||||| ||||| |||||||||| || |||  ||||||||||||||||||||||||||||||    
T  33682191 tggtaagtgcgcagcaatattccgatcggaattcatgattgatattcttcttggatcaaactagtgtatggctctggataccaattgttaggggaaaca 33682093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 22464826 - 22464696
Alignment:
Q  29 aatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatc 128  Q
    |||| ||||||| |||||||||||||||||||||||||   || |  |||||||||||||||||  |||||||||||  ||||||| ||| || ||||||    
T  22464826 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatc 22464727  T
Q  129 ttccgctcagtgtaatatatcatcaagtcat 159  Q
    | |||||| |||||| |||||||||| ||||    
T  22464726 tcccgctcggtgtaacatatcatcaaatcat 22464696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 26656340 - 26656437
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaaca 107  Q
    ||||||||||||||||||| ||||  |||| |||||||||||||||||||||| |||| || | | ||||||||||||||||||| |||||||||||||    
T  26656340 gagatgaaatataacctactaatagtgtgcgaaataaaattaggaggtaaatgacctt-ctaagatctctttgcggtgaatgttcgaataatatcaaca 26656437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 7886661 - 7886767
Alignment:
Q  13 tgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatc 112  Q
    ||||||||||| || |||||  |||||||||||||||||||||||| || |||| ||||||| |||||||||||||||||  ||||  ||||||||||||    
T  7886661 tgaaatataacatatcaatagtgtgctaaataaaattaggaggtaagtgacctttctgaaacttctttgcggtgaatgtttgaata--atcaacatcatc 7886758  T
Q  113 aaatgactt 121  Q
      |||||||    
T  7886759 ggatgactt 7886767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 13308828 - 13308745
Alignment:
Q  73 acctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagt 156  Q
    ||||||||  ||||||||||| |||||||||||||||||||| |||||| |||||||  ||||| |||||| ||||||||||||    
T  13308828 acctctttatggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctctcgctcggtgtaacatatcatcaagt 13308745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 34317482 - 34317625
Alignment:
Q  19 ataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatga 118  Q
    ||||||| ||||||  ||||||| |||||||||||||||||||| |||  ||| |||||||||||||||       || |||||||||||||| || |||    
T  34317482 ataacctgccaatagtgtgctaattaaaattaggaggtaaatgctctttttgagacctctttgcggtga------gaacaatatcaacatcatgaagtga 34317575  T
Q  119 cttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||| |||||||    ||| |||||| |||||||||||||||  |||||||    
T  34317576 cttgaatatctcttactcggtgtaacatatcatcaagtcattgaaccaca 34317625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 18425992 - 18426072
Alignment:
Q  41 aataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgactt 121  Q
    ||||||||||||||||||||  | ||  ||| |||||||| |||||||||||| |||||||||||||| ||||| ||||||    
T  18425992 aataaaattaggaggtaaataacatttttgagacctctttacggtgaatgttcgaataatatcaacattatcaagtgactt 18426072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 31392550 - 31392485
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataat 100  Q
    |||||||||||||||| |||||||||||||||   || ||||||||| ||| ||||||| ||||||    
T  31392550 gtgctaaataaaattaagaggtaaatgcccttttcgagacctctttgaggtaaatgttcgaataat 31392485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 1955005 - 1954952
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgc 62  Q
    |||||||||||||| ||  ||||| |||||||||||||||||| | ||||||||    
T  1955005 gagatgaaatataatctgtcaataacgtgctaaataaaattagaaagtaaatgc 1954952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 13309765 - 13309708
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgccctt 66  Q
    |||||||||||||| ||  |||||  ||||||||||| |||| |||||||||||||||    
T  13309765 gagatgaaatataatctgtcaatagtgtgctaaataatattatgaggtaaatgccctt 13309708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 3074545 - 3074418
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| | ||||||  |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  3074545 gagatgaaacataacttgccaatagtgtgctaaataaaattaggagataaatgcccttcctgagacctctttgcgatgaatgttcaaataatatcaacat 3074446  T
Q  109 catcaaatgacttaaatatcttccgctc 136  Q
    |||||| |||||| | ||||| ||||||    
T  3074445 catcaagtgacttgattatctcccgctc 3074418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 31944792 - 31944633
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| |  |||||  || ||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||||    
T  31944792 gagatgaaacataacttgtcaatagtgtactaaataaaattaggaggtaaatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacat 31944693  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| |||||| |||||||  | ||| |||||| |||||||||||||||  |||||||    
T  31944692 catcaagtgacttgaatatctcacactcggtgtaacatatcatcaagtcattgaaccaca 31944633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 12211225 - 12211384
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||| | ||   || ||||| |||   ||||||||| ||||||||||||||    
T  12211225 gagatgaaatataacctaccaatagtgtgctaaataaaattaggaggtaaatgtcattttcgagacctcattgaaatgaatgttcgaataatatcaacat 12211324  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||||||||||| ||||||| | | || |||||| |||||||||||||||  |||||||    
T  12211325 catcaaatgacttgaatatctcctgttcggtgtaacatatcatcaagtcattgaaccaca 12211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 6 - 168
Target Start/End: Complemental strand, 42843889 - 42843724
Alignment:
Q  6 agtgagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctc---tttgcggtgaatgttcaaataatat 102  Q
    ||||||||||||||||||  ||||||| |||||||||||||||||||| || |||||||| || || |||||   |||| ||||||||||| | ||||||    
T  42843889 agtgagatgaaatataactcaccaataacgtgctaaataaaattaggatgtcaatgccctccccgagacctcctctttgtggtgaatgttcgattaatat 42843790  T
Q  103 caacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||||||||| |||||| |||||||  | |||| | ||| |||||||||| |||| ||||||||    
T  42843789 caacatcatcaagtgacttgaatatctctcactcaatataacatatcatcaactcattaaaccaca 42843724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 53693033 - 53693192
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| ||||| | ||||||  ||||||||| |||||| ||||| ||||||||| | || ||||||||||| ||||||||| ||||||||||||||    
T  53693033 gagatgaaacataacttgccaatagtgtgctaaatgaaattaagaggtgaatgccctttccgagacctctttgcgatgaatgttcgaataatatcaacat 53693132  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| || ||| | ||||| ||||||  ||||| |||||||||||||||  |||||||    
T  53693133 catcaagtgccttgattatctcccgctcgatgtaacatatcatcaagtcattgaaccaca 53693192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 55464660 - 55464818
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||||||||||| |||||  |||||||||||||||||||||||| ||||| ||   | | |||||||   |||||||||| |||||||||||||||    
T  55464660 agatgaaatataacctgccaattacgtgctaaataaaattaggaggtagatgcctttttcgtagcctctttcgagtgaatgttcgaataatatcaacatc 55464759  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||| |||||| | | ||| |||||| |||||| |||||||||||||||  |||||||    
T  55464760 atcaagtgacttgattttctcccgctcggtgtaacatatcatcaagtcattcaaccaca 55464818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 27365013 - 27364900
Alignment:
Q  55 gtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaa 154  Q
    ||||||||||||   || |||||||| |||||||||||| |||||||||||||||||||| |||||| ||||||| |||||| |||||| ||||||||||    
T  27365013 gtaaatgcccttttcgagacctcttttcggtgaatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtgtaacatatcatcaa 27364914  T
Q  155 gtcataaaaccaca 168  Q
    |||||  |||||||    
T  27364913 gtcatttaaccaca 27364900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 8897925 - 8898037
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||||   ||| |||| |||||||||||||||||| || ||||||||||||||    
T  8897925 gagatgaaatataaactaccaatagtttgctaaataaaattaggaggtaaatagtctttctgagacctctttgcggtgaatgctcgaataatatcaacat 8898024  T
Q  109 catcaaatgactt 121  Q
    |||| | ||||||    
T  8898025 catccagtgactt 8898037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 4325587 - 4325429
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||| || |||||||  |||||  |||||||||||||||||||||||| ||||||| |||| || | | ||| |||||||||||||||||||||||||    
T  4325587 gagatgcaacataacctgtcaatagtgtgctaaataaaattaggaggtaattgccctttctgagacat-tctgctgtgaatgttcaaataatatcaacat 4325489  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||| ||  || | ||||| || ||| |||||| |||||||||||||||  |||||||    
T  4325488 catcaagtgggttgattatctcccactcggtgtaacatatcatcaagtcattgaaccaca 4325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 10632643 - 10632757
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtg--aatgttcaaataatatcaac 106  Q
    |||||||||||||| |||||||||  |||| ||||||||||||||||||||||   || | || || |||||||||||  ||||||| ||||| || |||    
T  10632643 gagatgaaatataagctaccaatagtgtgcaaaataaaattaggaggtaaatgatatttccgagacttctttgcggtgaaaatgttcgaataacattaac 10632742  T
Q  107 atcatcaaatgactt 121  Q
    |||||||| ||||||    
T  10632743 atcatcaagtgactt 10632757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 25182878 - 25182935
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgccctt 66  Q
    |||||||||||||||||| |||||  ||||||||||||||||| |||||||| |||||    
T  25182878 gagatgaaatataacctatcaatagtgtgctaaataaaattagaaggtaaataccctt 25182935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 43137299 - 43137153
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    ||||||||||| || ||||||  |||||||||||||||||||||||||| || || |||| ||||||| |||| |||||||| |||||||||||||||||    
T  43137299 atgaaatataatctgccaatagtgtgctaaataaaattaggaggtaaataccttttctgagacctctt-gcggcgaatgttcgaataatatcaacatcat 43137201  T
Q  112 caaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||| |||||| ||||||| |||||| |||||| |||||||||||||||    
T  43137200 caagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcat 43137153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 31989204 - 31989046
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    ||||||||||||||||   |||  ||||||||||||||||||||||||||||||||| | |  ||||||||   |||||||||| |||||||||||||||    
T  31989204 agatgaaatataacctgttaatggcgtgctaaataaaattaggaggtaaatgccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 31989105  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||| |||||| ||||||| |||||| |||||| |||||||||||||||  |||||||    
T  31989104 atcaagtgacttgaatatctcccgctcggtgtaacatatcatcaagtcattcaaccaca 31989046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 53710573 - 53710424
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||| |||||||||||  ||||| ||||||||||||||||||||||||||||||||| | |  ||||||||   |||||||||| |||||||||||||||    
T  53710573 agataaaatataacctgtcaatagcgtgctaaataaaattaggaggtaaatgccctttccgtgacctctttcgagtgaatgttcgaataatatcaacatc 53710474  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    ||||| |||||| ||||||| |||||| |||||| | |||||||||||||    
T  53710473 atcaagtgacttgaatatctcccgctcggtgtaacagatcatcaagtcat 53710424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 37381871 - 37382027
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcat 111  Q
    ||||||||||||||  ||||| |||||| ||||||||||||||| ||||| | || | || |||||||||| |||||||||| |||||||| ||||||||    
T  37381871 atgaaatataacctgtcaatagcgtgctgaataaaattaggaggcaaatgtcatttccgagacctctttgcagtgaatgttcgaataatataaacatcat 37381970  T
Q  112 caaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    |||||||||| |||||||   |||||||||||||||||||| ||||||  |||||||    
T  37381971 caaatgacttgaatatctcatgctcagtgtaatatatcatcgagtcatttaaccaca 37382027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 3856875 - 3857034
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| || || | ||||||  ||||||||||||||||||||||||||   ||| |||| ||||||||||||||||||||  ||||||||||||||    
T  3856875 gagatgaaacattacatgccaataatgtgctaaataaaattaggaggtaaattttctttctgagacctctttgcggtgaatgtttgaataatatcaacat 3856974  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||||||||||||| ||||||| || ||| | |||| || ||||||||||||  |||||||    
T  3856975 catcaaatgacttgaatatctcccactctgagtaacatgtcatcaagtcatttaaccaca 3857034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 35 - 159
Target Start/End: Complemental strand, 51262129 - 51262005
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    |||||||||||||||||||||||||||  |||    | |||||||| || ||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  51262129 gtgctaaataaaattaggaggtaaatgttcttttcaagacctctttacgatgaatgttcgaataatatcaacatcatcaagtgacttgaatatcttccgc 51262030  T
Q  135 tcagtgtaatatatcatcaagtcat 159  Q
    | ||||||| |||||||||| ||||    
T  51262029 ttagtgtaacatatcatcaattcat 51262005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 24908393 - 24908551
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||||||| ||||| | |  ||||||||   |||||||||| |||||||||||||||    
T  24908393 agatgaaatataacctgtgaatagcgtgctaaataaaattaggaggtaaataccctttccgcgacctctttcgagtgaatgttcgaataatatcaacatc 24908492  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccaca 168  Q
     ||||  ||||| ||||||| | |||  |||||| |||||||||||||||  |||||||    
T  24908493 ttcaagcgacttgaatatctcctgcttggtgtaacatatcatcaagtcattcaaccaca 24908551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 24988812 - 24988921
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||| ||  |||||  |||||||||||||||||||| || |||||||| | || ||||||||||||||||||||| ||||||||||||||    
T  24988812 gagatgaaacataatctggcaatagtgtgctaaataaaattaggagatacatgccctttccgagacctctttgcggtgaatgttcgaataatatcaacat 24988911  T
Q  109 catcaaatga 118  Q
    ||||||||||    
T  24988912 catcaaatga 24988921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 15668111 - 15668002
Alignment:
Q  47 attaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatat 146  Q
    ||||||||||||||||| || | || |||||||||  ||| |||||| |||||||||||||||||||| |||||| ||||||| |||||| || ||| ||    
T  15668111 attaggaggtaaatgccttttccgatacctctttgttgtgcatgttcgaataatatcaacatcatcaagtgacttgaatatctcccgctcggtataacat 15668012  T
Q  147 atcatcaagt 156  Q
    ||||||||||    
T  15668011 atcatcaagt 15668002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 121
Target Start/End: Original strand, 22934798 - 22934910
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||||||||  || |||||  ||  |||| ||||||| |||||||||| |||| | || ||||||||||||||||||||| ||||||||||||||    
T  22934798 gagatgaaatataatatatcaatagtgtcttaaacaaaattaagaggtaaatgacctttccgagacctctttgcggtgaatgttctaataatatcaacat 22934897  T
Q  109 catcaaatgactt 121  Q
    |||||| ||||||    
T  22934898 catcaagtgactt 22934910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 51408609 - 51408665
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgccctt 66  Q
    |||||||||||||| |  ||||| |||||||||||||||||||||||||||||||||    
T  51408609 agatgaaatataacatgtcaatagcgtgctaaataaaattaggaggtaaatgccctt 51408665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 9743444 - 9743393
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaat 60  Q
    ||||||||| ||||||||||||||  |||||||||||||||| |||||||||    
T  9743444 gagatgaaacataacctaccaatagtgtgctaaataaaattacgaggtaaat 9743393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 43585979 - 43585933
Alignment:
Q  15 aaatataacctaccaatatcgtgctaaataaaattaggaggtaaatg 61  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||    
T  43585979 aaatataacctgataatagcgtgctaaataaaattaggaggtaaatg 43585933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 43585907 - 43585843
Alignment:
Q  95 aataatatcaacatcatcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||||| |||||| |||| | ||||  |||||| |||||| |||||| |||||||||||||||    
T  43585907 aataatattaacatcgtcaagtaacttggatatctcccgctcggtgtaacatatcatcaagtcat 43585843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 214161 - 214320
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatc 109  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||| | |  ||||||||   || ||||||| |||||||||||||||    
T  214161 agatgaaatataacctgccaatagcgtgctaaataaaattaggaggtaaattccctttccgcgacctcttttgagttaatgttcgaataatatcaacatc 214260  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcataaaaccacat 169  Q
    ||||| |||||  ||||||| | |||| |||||| |||||||||||||||  ||||||||    
T  214261 atcaagtgactcgaatatctcctgctcggtgtaacatatcatcaagtcattcaaccacat 214320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 159
Target Start/End: Complemental strand, 260094 - 259944
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    |||||||||||||| ||  ||||| ||||||||||||||||||| |||||||||| || | || ||||||||||||||||||||| |||||||||||  |    
T  260094 gagatgaaatataatctgtcaatagcgtgctaaataaaattaggtggtaaatgccatttccgagacctctttgcggtgaatgttcgaataatatcaatgt 259995  T
Q  109 catcaaatgacttaaatatcttccgctcagtgtaatatatcatcaagtcat 159  Q
    |||||| |||||| ||||| | ||||||  ||||| |||||||||||||||    
T  259994 catcaagtgacttgaatatatcccgctcgatgtaacatatcatcaagtcat 259944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 17890 - 17757
Alignment:
Q  35 gtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgc 134  Q
    |||||||||||||||||||| |||||| |||| | || ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||| ||||    
T  17890 gtgctaaataaaattaggagttaaatgtcctttcggagacctctttgcggtgaatgttcgaataatatcaacatcagcaagtgacttaaatatctcccgc 17791  T
Q  135 tcagtgtaatatatcatcaagtcataaaaccaca 168  Q
    ||  |||||  ||||||||||||||  |||||||    
T  17790 tcgatgtaacgtatcatcaagtcattgaaccaca 17757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 1059 - 950
Alignment:
Q  9 gagatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacat 108  Q
    ||||||||| |||| ||  |||||  |||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||| ||||||||||||||    
T  1059 gagatgaaacataatctggcaatagtgtgctaaataaaattaggagataaatgccctttcggagacctctttgcggtgaatgttcgaataatatcaacat 960  T
Q  109 catcaaatga 118  Q
    ||||||||||    
T  959 catcaaatga 950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 15970 - 15840
Alignment:
Q  29 aatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatc 128  Q
    |||| ||||||| ||||||||||||||||||||||||| | || |  |||||||||||||||||| |||||||||||  ||||||| ||| || ||||||    
T  15970 aatagcgtgctagataaaattaggaggtaaatgccctttccgagatttctttgcggtgaatgttcgaataatatcaatgtcatcaagtgatttgaatatc 15871  T
Q  129 ttccgctcagtgtaatatatcatcaagtcat 159  Q
    | |||||| |||||| |||||||||| ||||    
T  15870 tcccgctcggtgtaacatatcatcaaatcat 15840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 1545 - 1430
Alignment:
Q  36 tgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatcttccgct 135  Q
    |||||||||||||||||||| ||||||| || | || ||||||||||  ||||||||| |||||||||||||||||||| ||| || ||||||| |||||    
T  1545 tgctaaataaaattaggaggcaaatgccatttccgagacctctttgcaatgaatgttcgaataatatcaacatcatcaagtgatttgaatatctcccgct 1446  T
Q  136 cagtgtaatatatcat 151  Q
    | |||||| |||||||    
T  1445 cggtgtaacatatcat 1430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 435350 - 435491
Alignment:
Q  12 atgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaat--gttcaaataatatcaacatc 109  Q
    ||||||||||| ||  |||||  ||||||||||||||||||||||||||| ||||   || ||||||| ||||| |||  |||| ||||||||||||||     
T  435350 atgaaatataatctgacaatagtgtgctaaataaaattaggaggtaaatgtccttttcgagacctcttcgcggttaatatgttctaataatatcaacata 435449  T
Q  110 atcaaatgacttaaatatcttccgctcagtgtaatatatcat 151  Q
    ||||| |||||| |||||||||||||| |||||| |||||||    
T  435450 atcaagtgacttgaatatcttccgctcggtgtaacatatcat 435491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 197261 - 197131
Alignment:
Q  29 aatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataatatcaacatcatcaaatgacttaaatatc 128  Q
    |||| ||||||| |||||||||||||||||||||||||   || |  |||||||||||||||||  |||||||||||  ||||||| ||| || ||||||    
T  197261 aatagcgtgctagataaaattaggaggtaaatgcccttttcgagatttctttgcggtgaatgtttgaataatatcaatgtcatcaagtgatttgaatatc 197162  T
Q  129 ttccgctcagtgtaatatatcatcaagtcat 159  Q
    | |||||| |||||| |||||||||| ||||    
T  197161 tcccgctcggtgtaacatatcatcaattcat 197131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 100
Target Start/End: Complemental strand, 9251 - 9161
Alignment:
Q  10 agatgaaatataacctaccaatatcgtgctaaataaaattaggaggtaaatgcccttcctgaaacctctttgcggtgaatgttcaaataat 100  Q
    |||||||||||||||||  || | | | |||||||||||||||||||||||| |||| ||   ||||||||   |||||||||| ||||||    
T  9251 agatgaaatataacctaaaaaaagcatcctaaataaaattaggaggtaaatgtcctttctacgacctctttcgagtgaatgttcgaataat 9161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University